PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14814_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family DBB
Protein Properties Length: 79aa    MW: 8416.75 Da    PI: 7.6255
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14814_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.72.4e-08436436
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                 + C+ +++  + l+C+ +  +lC +C ++ H  
  RrC14814_p1  4 KLCDSCKSATAALYCRPDAAFLCLSCDSKVHAA 36
                 68***************************9954 PP
2zf-B_box24.17.5e-084678335
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                  ++C+ +e+ +++  C+ +   lC +C   +H+
  RrC14814_p1 46 VWMCEVCEQAPAHVTCKADAAALCVTCDRDIHS 78
                 689**************************9994 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.2E-13148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.438148IPR000315B-box-type zinc finger
PfamPF006431.6E-6443IPR000315B-box-type zinc finger
CDDcd000213.99E-5548No hitNo description
PROSITE profilePS501199.4714479IPR000315B-box-type zinc finger
PfamPF006439.0E-64678IPR000315B-box-type zinc finger
CDDcd000213.76E-54779No hitNo description
SMARTSM003360.424979IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU9497853e-58KU949785.1 Raphanus sativus var. raphanistroides isolate Rs-1 CONSTANS-like zinc finger protein 4 (COL4) gene, partial cds.
GenBankKU9497863e-58KU949786.1 Raphanus sativus var. raphanistroides isolate Rs-2 CONSTANS-like zinc finger protein 4 (COL4) gene, partial cds.
GenBankKU9497873e-58KU949787.1 Raphanus sativus var. raphanistroides isolate Rs-3 CONSTANS-like zinc finger protein 4 (COL4) gene, partial cds.
GenBankKU9497883e-58KU949788.1 Raphanus sativus var. raphanistroides isolate Rs-4 CONSTANS-like zinc finger protein 4 (COL4) gene, partial cds.
GenBankKU9497893e-58KU949789.1 Raphanus sativus var. raphanistroides isolate Rs-5 CONSTANS-like zinc finger protein 4 (COL4) gene, partial cds.
GenBankKU9497903e-58KU949790.1 Raphanus sativus var. raphanistroides isolate Rs-6 CONSTANS-like zinc finger protein 4 (COL4) gene, partial cds.
GenBankKU9497913e-58KU949791.1 Raphanus sativus var. raphanistroides isolate Rs-7 CONSTANS-like zinc finger protein 4 (COL4) gene, partial cds.
GenBankKU9497923e-58KU949792.1 Raphanus sativus var. raphanistroides isolate Rs-8 CONSTANS-like zinc finger protein 4 (COL4) gene, partial cds.
GenBankKU9497973e-58KU949797.1 Raphanus sativus var. raphanistroides isolate Rs-13 CONSTANS-like zinc finger protein 4 (COL4) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454822.11e-49PREDICTED: zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T91e-50COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A078G3962e-48A0A078G396_BRANA; BnaA09g04740D protein
STRINGBo7g096320.14e-49(Brassica oleracea)
STRINGBostr.5763s0023.1.p4e-49(Boechera stricta)
STRINGXP_006394745.14e-49(Eutrema salsugineum)
STRINGXP_010454822.15e-49(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.13e-52CONSTANS-like 4