PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1484_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GeBP

Protein Properties

Length: 403aa MW: 44027.4 Da PI: 5.2542

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1484_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	123.3	1.2e-38	149	244	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +fqr+wseeDei+ LqGlid++++tg+sp+dd++afy +vkksisf+vsk+ql++K+ LK K++++ k k+g+e++fsk+hd+k+f+lsk +Wg RrC1484_p2 149 YFQRVWSEEDEIAALQGLIDYRDETGASPYDDTNAFYLYVKKSISFDVSKTQLLKKLWGLKTKYENNLGKEKNGEEVTFSKPHDRKAFDLSKLFWG 244 79*********************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.4E-33	150	244	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MSKKRFNPLE DPPNASSSDE DNDEMEEAGN SSSEEETDDE SSLKKPESAA PEKNHQPSDS 60 GSGSGSDEET DSDSQTERKN SSAVKSITGT KDSAVVVVKK NHDSDKKVKP LTKCSTKKRS 120 LSDTDGAAAE AKKAKTGSGT GEESAKKSYF QRVWSEEDEI AALQGLIDYR DETGASPYDD 180 TNAFYLYVKK SISFDVSKTQ LLKKLWGLKT KYENNLGKEK NGEEVTFSKP HDRKAFDLSK 240 LFWGGDGVAL DSAVKSNGKK SKKSSKTKVE EAEKVALDSA NGKSKKSSKS KVEAEKKELA 300 SSSSPNGKSC EDEVVTNKGG EASGVVAEVD AFEKSGLVKA LARFGVDDIT AQQGWSRLAL 360 EDKKRFEEEW KVLQLRELEF YSQKSGFIHE VVTKMAESFQ PNP

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MSKKRFNPLE DPPNASSSDE DNDEMEEAGN SSSEEETDDE SSLKKPESAA PEKNHQPSDS  60
GSGSGSDEET DSDSQTERKN SSAVKSITGT KDSAVVVVKK NHDSDKKVKP LTKCSTKKRS  120
LSDTDGAAAE AKKAKTGSGT GEESAKKSYF QRVWSEEDEI AALQGLIDYR DETGASPYDD  180
TNAFYLYVKK SISFDVSKTQ LLKKLWGLKT KYENNLGKEK NGEEVTFSKP HDRKAFDLSK  240
LFWGGDGVAL DSAVKSNGKK SKKSSKTKVE EAEKVALDSA NGKSKKSSKS KVEAEKKELA  300
SSSSPNGKSC EDEVVTNKGG EASGVVAEVD AFEKSGLVKA LARFGVDDIT AQQGWSRLAL  360
EDKKRFEEEW KVLQLRELEF YSQKSGFIHE VVTKMAESFQ PNP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018465248.1	0.0	PREDICTED: probable transcription factor At1g11510
TrEMBL	A0A3N6Q8Y7	1e-177	A0A3N6Q8Y7_BRACR; Uncharacterized protein
STRING	Bo5g014840.1	1e-177	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G11510.1	3e-55	DNA-binding storekeeper protein-related transcriptional regulator