PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1497_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 193aa    MW: 21441.5 Da    PI: 7.4699
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1497_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.75.7e-17105139135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 Cs+Cg+ k p+WR gp g ktLCnaCG+++++ +l
  RrC1497_p1 105 CSHCGVQKMPQWRTGPLGAKTLCNACGVHFKSGRL 139
                 *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.47799135IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-1299153IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-13101161No hitNo description
Gene3DG3DSA:3.30.50.101.2E-12103136IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.70E-13104152No hitNo description
PfamPF003201.5E-14105139IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MESVELSLTS METTAVGDDF SVDDLLDLSN DNVFVEDGAE LKIQGVSVSS NFQTTLNRTC  60
LAVPTELEWL IPLRRLLLLH TVLGSNEQTG LKKKPLEVQT QTRRCSHCGV QKMPQWRTGP  120
LGAKTLCNAC GVHFKSGRLL PKYRPACSPT FSSELHSNHH RKVVEMRQKK EMSGDADEPG  180
MNRTVTVQAV QSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896272e-92AC189627.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595502.12e-60PREDICTED: GATA transcription factor 6-like
RefseqXP_013595503.12e-60PREDICTED: GATA transcription factor 6-like
RefseqXP_013595504.12e-60PREDICTED: GATA transcription factor 6-like
TrEMBLA0A0D3DDX44e-59A0A0D3DDX4_BRAOL; GATA transcription factor
STRINGBo7g100740.16e-60(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129872430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.14e-48GATA transcription factor 6