PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15005_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 149aa    MW: 17348.2 Da    PI: 4.4521
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15005_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-1975124355
          AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr ++ +g+++AeIrd    + k  r++lg+f+taeeAa a+++a+ +l+g
  RrC15005_p1  75 YRGVRKRP-WGKYAAEIRDsT--R-KGIRVWLGTFDTAEEAALAYDQAAFALKG 124
                  9*******.**********32..2.24***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-1374124IPR001471AP2/ERF domain
SMARTSM003801.4E-2874138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-2774132IPR001471AP2/ERF domain
PROSITE profilePS5103221.1474132IPR001471AP2/ERF domain
CDDcd000188.45E-2575127No hitNo description
PRINTSPR003671.9E-117586IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-2075130IPR016177DNA-binding domain
PRINTSPR003671.9E-1198114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MEFQTTLFSE NQSQDSSSTT SWSSQESFLW EDSFLHQSFS PSYYFDDFST FESSIVKEEE  60
DATVPVKQEE EERSYRGVRK RPWGKYAAEI RDSTRKGIRV WLGTFDTAEE AALAYDQAAF  120
ALKGDLAFIV YPMKSFGRYV MAMLEVYRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-25711321172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9216491e-68EU921649.1 Brassica oleracea var. gemmifera ethylene-responsive factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491355.17e-74PREDICTED: ethylene-responsive transcription factor ERF094-like
SwissprotQ8VYM06e-39ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A397Y8224e-65A0A397Y822_BRACM; Uncharacterized protein
TrEMBLM4EUF14e-65M4EUF1_BRARP; Uncharacterized protein
STRINGBra032433.1-P7e-66(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06160.12e-26octadecanoid-responsive Arabidopsis AP2/ERF 59
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]