PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1503_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 412aa    MW: 45127.1 Da    PI: 8.4775
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1503_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.86e-06100120526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C+f+ + G Ck Gd C+F H+
  RrC1503_p5 100 VCKFWKA-GNCKKGDHCSFLHS 120
                 5******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.9E-693120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-695120IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-595121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.497100122IPR000571Zinc finger, CCCH-type
SMARTSM003201.1E-4126165IPR001680WD40 repeat
SuperFamilySSF509781.46E-42128174IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.4E-41129407IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5008213.984133174IPR001680WD40 repeat
PROSITE profilePS5029419.354133337IPR017986WD40-repeat-containing domain
PfamPF117155.6E-6148182No hitNo description
PROSITE patternPS006780152166IPR019775WD40 repeat, conserved site
PRINTSPR003204.8E-8152166IPR020472G-protein beta WD-40 repeat
SMARTSM0032054205242IPR001680WD40 repeat
SuperFamilySSF509781.46E-42212408IPR017986WD40-repeat-containing domain
SMARTSM003208.7E-4250288IPR001680WD40 repeat
PfamPF004004.0E-5254288IPR001680WD40 repeat
PROSITE profilePS5008210.542272297IPR001680WD40 repeat
PROSITE patternPS006780275289IPR019775WD40 repeat, conserved site
PRINTSPR003204.8E-8275289IPR020472G-protein beta WD-40 repeat
SMARTSM003204.2E-5291328IPR001680WD40 repeat
PfamPF004000.004293327IPR001680WD40 repeat
PROSITE profilePS500829.172298337IPR001680WD40 repeat
PRINTSPR003204.8E-8315329IPR020472G-protein beta WD-40 repeat
SMARTSM003206.1369406IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MSNYYKAPRR RYSNARNFGV ERQEESLVAD ILPTRPYGNR WSRNLVWTAS HGNNKPMKSD  60
NTYASTRPQP SSLSRKDAAY VQRTDTRGWD RGSPKSKECV CKFWKAGNCK KGDHCSFLHS  120
WTSLPGMLMV ASLEGHKKDL KGIALPQGSD KLFSASSDGT LRIWDCHTGQ CVHTINLQAE  180
AGSLMSEGPW VFLGLPNAVK AFNVQTSKEL HLNGVVGQVR AMTIGNGMLF AGTSSGSISV  240
WKANDTDSDP FTYLTSLEGH HSGEVTCFVV GGQRLYSGSV DRTIKVWDLN TLECTMTLRQ  300
HTDAVTSLLC WDQYLISSSL DGSIKVWACS ENGSLKSVHS LCGMSDGEGK PIMFCSYQNG  360
TVSICDLPSF EERGKMFSTN TVGAITLGPE GLLFTGDKSG KLLVWNLAGT KV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A3e-1813236910323Tako8
6g6n_A3e-1813236910323Tako8
6g6n_B3e-1813236910323Tako8
6g6n_C3e-1813236910323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448936.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A3P6C1Y00.0A0A3P6C1Y0_BRACM; Uncharacterized protein (Fragment)
STRINGBra025586.1-P0.0(Brassica rapa)
STRINGBo4g140040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein