PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1505_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 138aa    MW: 15227.6 Da    PI: 6.8045
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1505_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.91.3e-10117138122
                 ---SS-EEEEEEE--TT-SS-E CS
        WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                 ldDg++WrKYG+K+vk+s++pr
  RrC1505_p6 117 LDDGFKWRKYGKKMVKNSPNPR 138
                 59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-11103138IPR003657WRKY domain
SuperFamilySSF1182901.02E-8110138IPR003657WRKY domain
PROSITE profilePS5081113.448112138IPR003657WRKY domain
PfamPF031064.1E-6118138IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MNDAETNLAR SFSDDTHSGL DLPDLYLSDE WMDDDLVSAV SGMNHSYGHQ TSNHDPRASS  60
VFFSGSSSSF SHHQSPSTNA SVAAAATTAS AENQVKKEKK KVKERVAFKT QSEVEVLDDG  120
FKWRKYGKKM VKNSPNPR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596728.12e-67PREDICTED: probable WRKY transcription factor 50
RefseqXP_022561792.12e-67probable WRKY transcription factor 50
RefseqXP_022561862.12e-67probable WRKY transcription factor 50
SwissprotQ8VWQ52e-59WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A078IRM84e-66A0A078IRM8_BRANA; BnaC07g49530D protein
TrEMBLA0A0D3DCP24e-66A0A0D3DCP2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E4Y54e-66A0A3P6E4Y5_BRAOL; Uncharacterized protein
STRINGBo7g095430.16e-67(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.16e-44WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]