PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC15100_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 228aa MW: 24951.4 Da PI: 8.3645

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC15100_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.6	1.4e-40	46	145	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p kfa vhk+FGasnv+k+l ++pe +r da++slvyeA++r+rdPvyG++g i +lqqq++ l+ael +++ RrC15100_p1 46 PCAACKLLRRRCAQECPFSPYFSPHEPLKFASVHKVFGASNVSKMLMEVPEGHRADAANSLVYEANVRLRDPVYGCMGAIVALQQQVQALQAELTAVR 143 7**********************************************************************************************999 PP DUF260 99 ee 100 +e RrC15100_p1 144 SE 145 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.878	45	146	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.1E-41	46	143	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MQRERERLES EIGKKNKREA DALPHQMAGI RRPISGPLGA LNTITPCAAC KLLRRRCAQE 60 CPFSPYFSPH EPLKFASVHK VFGASNVSKM LMEVPEGHRA DAANSLVYEA NVRLRDPVYG 120 CMGAIVALQQ QVQALQAELT AVRSEILKYK QREAVATLIV PSNSQVAGYH NSGDVSVIAP 180 TPQTPSTPPQ RTAAHPDPPP PSSCVYSQPT TRALEYGEIE SENNSYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-41	46	149	11	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-41	46	149	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009141907.1	1e-129	PREDICTED: LOB domain-containing protein 15 isoform X2
Swissprot	Q8L5T5	1e-120	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A087H476	1e-135	A0A087H476_ARAAL; Uncharacterized protein
STRING	A0A087H476	1e-136	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-115	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]