PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC15157_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 195aa MW: 21353.8 Da PI: 4.4912

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC15157_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	33.8	6.7e-11	21	49	31	59
T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 31 gCpvkkkversaedpkvveitYegeHnhe 59 gC+++k+vers++dp++++itY++eHnh+ RrC15157_p1 21 GCSARKQVERSRTDPNMLVITYTSEHNHP 49 6***************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	14.584	7	51	IPR003657	WRKY domain
SuperFamily	SSF118290	5.36E-12	9	51	IPR003657	WRKY domain
SMART	SM00774	7.0E-9	11	50	IPR003657	WRKY domain
Pfam	PF03106	6.0E-8	20	49	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.2E-9	21	51	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MNSRSSGEVV PSDLWAWRKY GCSARKQVER SRTDPNMLVI TYTSEHNHPW PIQRNALAGS 60 TRSSSNPSSS KSSTATTPSN GPPNNTHFSS SASPSPLSAS AIKDEQREED MELKIVEDDD 120 DNQFAPYRQE LHDQHQPDDF FADLEELGGD SLSILLSQGV SSDGNNKTAA SDGISDFFGW 180 SGANNSNNDR ESRSL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189628	6e-62	AC189628.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003D10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018491962.1	1e-102	PREDICTED: probable WRKY transcription factor 14 isoform X3
Swissprot	Q9SA80	5e-83	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	A0A3P5YNE2	1e-92	A0A3P5YNE2_BRACM; Uncharacterized protein
STRING	Bo5g063280.1	1e-91	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3085	28	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	2e-76	WRKY DNA-binding protein 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]