PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC15179_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HB-other

Protein Properties

Length: 193aa MW: 21771 Da PI: 4.8749

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC15179_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.7	1.1e-09	10	42	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ryps +++ LA+++gL+ +qV++WF N R + RrC15179_p1 10 LRYPSDADKHLLARQTGLSRNQVSNWFINARVR 42 69*****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.855	1	46	IPR001356	Homeobox domain
SMART	SM00389	0.0023	2	50	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-13	9	53	IPR009057	Homeodomain-like
CDD	cd00086	1.07E-10	11	47	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.1E-18	12	52	IPR009057	Homeodomain-like
Pfam	PF05920	3.0E-13	12	42	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MVKSFSGLFL RYPSDADKHL LARQTGLSRN QVSNWFINAR VRLWKPMVEE MYQQEAKERE 60 EKELEENQKE DYQQTNNSSN NNDTKPNESN FTLVQTITAQ TPTTTMMTPT PHENDSSFLP 120 PSVVTAAPHS ISDAFTAATC QQDVSDHFQV DDGVMRFGTK QAGDVSLTLG LRHTGNMPDN 180 KNASFSVRDF GDF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352811	1e-149	AK352811.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-J15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018433268.1	1e-131	PREDICTED: LOW QUALITY PROTEIN: BEL1-like homeodomain protein 4
Swissprot	Q94KL5	4e-65	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	A0A0D3DVS8	1e-107	A0A0D3DVS8_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FJY0	1e-107	A0A3P6FJY0_BRAOL; Uncharacterized protein
STRING	Bo8g100290.1	1e-107	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	9e-59	BEL1-like homeodomain 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]