PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15218_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BBR-BPC
Protein Properties Length: 215aa    MW: 23904.8 Da    PI: 9.0492
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15218_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind271.2e-082415695
    GAGA_bind 56 rdmaflqrdkalaernkalverdnkllalllvenslasal 95
                 rd a++qrdkalaer+kal+erdn+l+al+++ensl++al
  RrC15218_p1  2 RDQALQQRDKALAERDKALIERDNALAALQHHENSLSFAL 41
                 99********************************998654 PP
2GAGA_bind247.11.2e-7568215152301
    GAGA_bind 152 krqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstk 249
                  ++ +++++k+ k+kk kk +e+ +  v++++  ++ k+++++  ++ln v++De t+PvPvC+CtG+ +qCYkWGnGGWqS+CCttt+S+yPLP++++
  RrC15218_p1  68 TTTSTNTTKAIKRKKGKKVGEDLNLLVASPG--KKCKKDWDTNHFGLNLVTFDEKTMPVPVCTCTGSAHQCYKWGNGGWQSSCCTTTLSQYPLPQMPN 163
                  4567788999999999999999999999999..57*************************************************************** PP

    GAGA_bind 250 rrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                  +r++R++grKmS+++f++lL++LaaeGydls  vDLkd+WA+HGtn+++ti+
  RrC15218_p1 164 KRHSRVGGRKMSGNVFSRLLSHLAAEGYDLSSHVDLKDYWARHGTNRYITIK 215
                  ***************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012269.8E-831215IPR010409GAGA-binding transcriptional activator
PfamPF062171.2E-772215IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
ARDQALQQRD KALAERDKAL IERDNALAAL QHHENSLSFA LSGGKRYQVD DGDNDDGFTL  60
DDVCPTTTTT STNTTKAIKR KKGKKVGEDL NLLVASPGKK CKKDWDTNHF GLNLVTFDEK  120
TMPVPVCTCT GSAHQCYKWG NGGWQSSCCT TTLSQYPLPQ MPNKRHSRVG GRKMSGNVFS  180
RLLSHLAAEG YDLSSHVDLK DYWARHGTNR YITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553462e-61AC155346.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH081N08, complete sequence.
GenBankAC1894802e-61AC189480.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB082F21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478600.11e-139PREDICTED: protein BASIC PENTACYSTEINE4
RefseqXP_018478601.11e-139PREDICTED: protein BASIC PENTACYSTEINE4
SwissprotQ8S8C61e-112BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A0D3C0Y81e-135A0A0D3C0Y8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CPR41e-135A0A3P6CPR4_BRAOL; Uncharacterized protein
STRINGBo4g145820.11e-136(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-105basic pentacysteine 4