PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15257_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HB-other
Protein Properties Length: 135aa    MW: 15240.2 Da    PI: 9.5123
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15257_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.4e-204398257
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                  kR+  t+ ql++Le+++ ++ yps+++r+eL++kl+L++rq ++WF+ rR k+kk
  RrC15257_p1 43 PKRQMKTPFQLQTLEQVYSEETYPSEATRAELSEKLDLSDRQLQMWFCHRRLKDKK 98
                 69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-183598IPR009057Homeodomain-like
PROSITE profilePS5007116.3253999IPR001356Homeobox domain
SMARTSM003895.8E-1841103IPR001356Homeobox domain
PfamPF000467.4E-184398IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-184498IPR009057Homeodomain-like
CDDcd000868.37E-154498No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MEMGSDGEED HQIRNVAGES NHNNKNKKMK KVVVVETKDS PKPKRQMKTP FQLQTLEQVY  60
SEETYPSEAT RAELSEKLDL SDRQLQMWFC HRRLKDKKDG QVKKQPPKPS SSASLLPPAF  120
SSVNHLPPAA APAAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19198RRLKDKKD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018432575.19e-55PREDICTED: homeobox-DDT domain protein RLT1 isoform X1
SwissprotF4HY568e-41RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A1J3DDT93e-49A0A1J3DDT9_NOCCA; Homeobox protein ceh-5
STRINGBo5g055970.16e-50(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.11e-40homeobox-1