PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1525_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 316aa    MW: 36177.6 Da    PI: 9.7545
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1525_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3629.5e-2023118199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 ffkv      ++s+ lv+p  f+ ++ ++k+ + +++l de grsW+v+ + + + +r   +v++kGW +F++++ L+ gDf+vF++d+ s+f   v++
  RrC1525_p6  23 FFKVY--LPEFNSRELVIPPAFI-NI-LEKPLPNQVVLADEIGRSWNVETNTEDTEERvgvVVFKKGWGKFANDHSLEFGDFLVFSHDRVSRF--SVTI 115
                 77777..67888899********.44.5567999****************88555555788*************************9988999..9*99 PP

                 E-S CS
          B3  97 frk 99 
                 f+k
  RrC1525_p6 116 FDK 118
                 998 PP
2B341.32.8e-13210299998
                 HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE- CS
          B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfr 98 
                  +++++++ +p +f++++g++ ee  ++ l de+g++W++k+ +  +++r+   + W +F+++++L +   ++F+++  ++  + + +v++fr
  RrC1525_p6 210 TTGSRRQMDIPTTFLKSNGIEMEE--DIELCDENGKKWRMKIVIHDRGQRF-SPGLWLSFCQSHKLTTSNKCLFEFIvrSNgACNQVLVRIFR 299
                 5688999***********988766..79999***********776666665.5668*******************773344456666677766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.98721119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-2122121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2122121IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-1823119IPR003340B3 DNA binding domain
PfamPF023621.2E-1723119IPR003340B3 DNA binding domain
CDDcd100175.89E-1823117No hitNo description
Gene3DG3DSA:2.40.330.108.7E-17198299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-16198299IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.449202301IPR003340B3 DNA binding domain
CDDcd100174.38E-10203299No hitNo description
SMARTSM010194.9E-13205301IPR003340B3 DNA binding domain
PfamPF023621.2E-11210299IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MVETSGKVSS SPSSFYARRD LEFFKVYLPE FNSRELVIPP AFINILEKPL PNQVVLADEI  60
GRSWNVETNT EDTEERVGVV VFKKGWGKFA NDHSLEFGDF LVFSHDRVSR FSVTIFDKNG  120
CKKDLVAVTT RADRSRVAVE KEPVLVIPVA DISTKRCGKS RKRVSVKEEP SGNRVRDPCE  180
MGWVPEKKKL KGFEEPVYKP KNPHFVRNIT TGSRRQMDIP TTFLKSNGIE MEEDIELCDE  240
NGKKWRMKIV IHDRGQRFSP GLWLSFCQSH KLTTSNKCLF EFIVRSNGAC NQVLVRIFRG  300
TMLTTVTRNS YQVLAM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454825.10.0PREDICTED: putative B3 domain-containing protein At5g66980
SwissprotQ9FGD21e-121Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBLA0A397XTT01e-180A0A397XTT0_BRACM; Uncharacterized protein
STRINGBo9g020470.11e-178(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-116B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]