PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1531_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 227aa    MW: 26064 Da    PI: 6.508
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1531_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-102269146
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     rg+ T eE+  +++++ ++G++     + Ia++++ gRt++++k++w++
       RrC1531_p5 22 RGNITLEEQFMILKLHSLWGNRyitKKSHIAQYLP-GRTDNEIKNYWRT 69
                     7999*********************99********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.562116IPR017930Myb domain
SuperFamilySSF466891.37E-15279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-5215IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-171674IPR009057Homeodomain-like
PROSITE profilePS5129416.5751775IPR017930Myb domain
SMARTSM007171.4E-62173IPR001005SANT/Myb domain
PfamPF002493.4E-82269IPR001005SANT/Myb domain
CDDcd001677.13E-72669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
LKRTGKSCRL RWLNYLRPDV RRGNITLEEQ FMILKLHSLW GNRYITKKSH IAQYLPGRTD  60
NEIKNYWRTR VQKQAKHLRC DVNSNLFKET MKNVWMPRLV ERINAQTPSP TYEQVDSMVT  120
DPSQPTAEPS PVEPGFVQFN QNHYCHEQHF VPASDVSATS SNSPADETLS EVQGGVVKGS  180
GYEPADQTGF GGFNDWGCVG GDNTWTDDES FWFLQELCNE TTSYSYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-1437540108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438809.11e-163PREDICTED: transcription factor MYB108
TrEMBLA0A397Z7E11e-139A0A397Z7E1_BRACM; Uncharacterized protein
TrEMBLM4CJT91e-139M4CJT9_BRARP; Uncharacterized protein
STRINGBra004473.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.11e-136myb domain protein 2