PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC15320_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 150aa MW: 16598.6 Da PI: 6.3

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC15320_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.3	4e-29	99	150	1	53
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkY RrC15320_p1 99 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKY 150 59*****************.****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.471	96	150	IPR017930	Myb domain
SuperFamily	SSF46689	6.81E-18	96	150	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-27	98	150	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-23	100	150	IPR006447	Myb domain, plants
Pfam	PF00249	8.8E-8	102	150	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MREEETDWFT RWEEELPSPE DLIPLSQSLI SPDLALAFDI KLPGNSGQPH HHHHRQSTPP 60 PQQLPSSQAN SSAEFAADSA DLGSGATAAG DEPARTLKRP RLVWTPQLHK RFVDAVAHLG 120 IKNAVPKTIM QLMSVDGLTR ENVASHLQKY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	2e-30	99	150	1	52	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437337.1	1e-95	PREDICTED: transcription factor PCL1-like
Swissprot	O22210	3e-52	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	A0A3P6FJ58	1e-86	A0A3P6FJ58_BRAOL; Uncharacterized protein
STRING	Cagra.0834s0003.1.p	6e-84	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1549	27	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	8e-63	G2-like family protein

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]