PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1555_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family FAR1
Protein Properties Length: 574aa    MW: 66091.2 Da    PI: 7.4698
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1555_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.82e-2416104291
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHelap 91 
                 +Y++YAk++GF + k +s++s+ ++e+++++f C ++g++++++++     ++ra+ ++gCka+++vk++     gkw+v+++++eHnHel p
  RrC1555_p5  16 YYKNYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDA----INPRASPKIGCKASMHVKRRPndgGGKWYVYSFVEEHNHELLP 104
                 8****************************************99887....9******************9877889**************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-2216104IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.744333369IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-9339367IPR007527Zinc finger, SWIM-type
SMARTSM005752.3E-8344371IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MLTQMEFDTH EDAYTYYKNY AKSAGFGTAK LSSRRSRASK EFIDAKFSCI RYGSKQQSDD  60
AINPRASPKI GCKASMHVKR RPNDGGGKWY VYSFVEEHNH ELLPDQAHFF RSHRIAAAES  120
DPRLRRKKNN NGPLLLADSK HLTAYHDLGL PRNLDYWSMW QDAFLKKFFK CVYRSCSEEE  180
FDRRWMKLID KFHLRDVEWM RCLYDERSFW APAFMRGVTF AGLSTRYRSE SVNSVFDRYV  240
QGETSVKEFL EGYGVMLEDR YEEEAKADFD AWHEAPELKS PSPFEKQVLL VYTHEIFRKF  300
QLEVLGAAAC HLTKESEEGT TYSVKDFEDD QKYMVEWDES KSDIYCSCRC FEYKGYLCRH  360
AIVVLQMSGV FTIPINYVLQ RWTNAARNRH QISGNLELVQ SNIRRFNDLC RRAIILGEEG  420
SLSQESYDVA MFAMKEAFKQ CAIKVNTIGY PTRCEEAAVQ PGDHIHEDNQ YGSTSKQIGL  480
EHDIQHASGQ GETRREKRSS LNNTSKKPKH VTQSGTVGEG SQEGFQHVVA APRPFQAGLA  540
AQFHSTIPAV FQNVIPAEFH NIPATNMHQN NPPG
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446587.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X2
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A397YS510.0A0A397YS51_BRACM; Uncharacterized protein
STRINGA0A087HIV30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]