PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15601_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family YABBY
Protein Properties Length: 202aa    MW: 22682.1 Da    PI: 6.9157
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15601_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY110.53.2e-3461092100
        YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelle.elkveeenlksnvekeesast 94 
                  ++f+ ++q+C+vqC+fC+til+vsvP+tsl++vvtvrCGhCtsllsvnl+kas    +ll++ shlde+ kee+++ +++veee++k+ +eke+s++t
  RrC15601_p1   6 QLFDLPGQICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASfiplHLLSSLSHLDETEKEEVAAtTDGVEEETWKVDQEKENSPTT 103
                  78999**********************************************9999999**************97651678999***********9999 PP

        YABBY  95 svssek 100
                   + ++k
  RrC15601_p1 104 LTMKMK 109
                  877654 PP
2YABBY58.72.5e-18120154135169
        YABBY 135 eeiqrikasnPdishreafsaaaknWahfPkihfg 169
                  eei+r+ka+nP ++h+eafs+aaknWahfP++ ++
  RrC15601_p1 120 EEIKRLKAQNPGMAHKEAFSLAAKNWAHFPPVQNK 154
                  9******************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046908.1E-3911153IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MTTLNQLFDL PGQICHVQCG FCTTILLVSV PFTSLSMVVT VRCGHCTSLL SVNLMKASFI  60
PLHLLSSLSH LDETEKEEVA ATTDGVEEET WKVDQEKENS PTTLTMKMKI KMCLVFTKLE  120
EIKRLKAQNP GMAHKEAFSL AAKNWAHFPP VQNKRAASDQ CFCEEDNNVL LSCNAPQDHE  180
VSNNGFRERK AQRHSIWGKS PF
Functional Description ? help Back to Top
Source Description
UniProtEssential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934751e-122AB493475.1 Arabidopsis thaliana At1g23420 mRNA for hypothetical protein, partial cds, clone: RAAt1g23420.
GenBankAF1950471e-122AF195047.1 Arabidopsis thaliana INNER NO OUTER (INO) mRNA, complete cds.
GenBankBT0264101e-122BT026410.1 Arabidopsis thaliana At1g23420 mRNA, complete cds.
GenBankDQ4462811e-122DQ446281.1 Arabidopsis thaliana clone pENTR221-At1g23420 inner no outer protein (At1g23420) mRNA, complete cds.
GenBankDQ6528551e-122DQ652855.1 Arabidopsis thaliana clone 0000017089_0000011971 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438612.11e-121PREDICTED: axial regulator YABBY 4
SwissprotQ9LDT31e-109YAB4_ARATH; Axial regulator YABBY 4
TrEMBLA0A3P5YGQ61e-116A0A3P5YGQ6_BRACM; Uncharacterized protein
STRINGBra024599.1-P1e-117(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80442740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.11e-111YABBY family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Simon MK,Skinner DJ,Gallagher TL,Gasser CS
    Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
    Genetics, 2017. 207(4): p. 1489-1500
    [PMID:28971961]