PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15642_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 164aa    MW: 18714.5 Da    PI: 10.0175
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15642_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.67.1e-1483134155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV +++++grW A+       g    +k  +lg+f  +eeAa+a++ a+ k +g
  RrC15642_p1  83 SIYRGVARHHQQGRWQAR---T---GrvaGNKDLYLGTFAKEEEAAEAYDIAAIKCRG 134
                  57****************...5...444346**********************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.192148IPR001471AP2/ERF domain
SMARTSM003804.8E-4854IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-91249IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-91348IPR001471AP2/ERF domain
PfamPF008476.3E-983134IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1683143IPR016177DNA-binding domain
PROSITE profilePS5103217.10884142IPR001471AP2/ERF domain
SMARTSM003801.7E-2584148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1684142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MLTPLMEKWL MLKSTLYLGG YDKEDKAARA YDLAALKYWN AAATTNFPIT NYLKELEEMK  60
HMTKLEFIAS LRRKSSGFSR GASIYRGVAR HHQQGRWQAR TGRVAGNKDL YLGTFAKEEE  120
AAEAYDIAAI KCRGINAVTN FEMNRYNVEA IMKSASHRWC SKTS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5856831e-168AY585683.1 Arabidopsis thaliana clone at5g10510 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026453426.18e-81AP2-like ethylene-responsive transcription factor AIL7
RefseqXP_026453427.18e-81AP2-like ethylene-responsive transcription factor AIL7
RefseqXP_026456816.17e-81AP2-like ethylene-responsive transcription factor AIL7 isoform X1
RefseqXP_026456817.17e-81AP2-like ethylene-responsive transcription factor AIL7 isoform X1
SwissprotQ8LSN25e-77BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A087GEB94e-81A0A087GEB9_ARAAL; Uncharacterized protein
STRINGA0A087GEB97e-82(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.11e-77AINTEGUMENTA-like 6