PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1566_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 216aa    MW: 24675 Da    PI: 8.9708
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1566_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629.1e-2071125155
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 rrk+ ++tk+q ++Lee F +n+++++++++eLA+ l+L++rqV vWFqNrRa++
  RrC1566_p2  71 RRKKLRLTKDQSHILEESFIQNHTLTHKQKQELATFLKLSQRQVEVWFQNRRARY 125
                 79999************************************************96 PP
2HD-ZIP_I/II96.92e-3172166190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtk......tkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl+k+q+++LEesF ++++L++++K+ela+ L+l++rqv+vWFqnrRAR+       +k++E+++e+Lkr++ +lke+n+rL+ eveeLr +
   RrC1566_p2  72 RKKLRLTKDQSHILEESFIQNHTLTHKQKQELATFLKLSQRQVEVWFQNRRARYVlgstafLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELR-A 166
                  69***************************************************8633333369******************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-2055125IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-2057124IPR009057Homeodomain-like
PROSITE profilePS5007117.18468128IPR001356Homeobox domain
SMARTSM003892.7E-1670132IPR001356Homeobox domain
CDDcd000863.33E-1671125No hitNo description
PfamPF000464.5E-1771125IPR001356Homeobox domain
SMARTSM003401.3E-15134177IPR003106Leucine zipper, homeobox-associated
PfamPF021833.2E-9134168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAVSPNSSFL ELTISIPSFS PSPSLPSSGD HMVRDLDINQ TPKMEKDREW IMISATPHVN  60
DDEDGNSGGR RRKKLRLTKD QSHILEESFI QNHTLTHKQK QELATFLKLS QRQVEVWFQN  120
RRARYVLGST AFLKHTEMEC EYLKRWFGSL KEQNRRLQIE VEELRALKPV STSVLTMCPR  180
CERVTAAADH DSNAVKEGTA PRSQSRMTIS SSSTLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16876GRRRKKLRL
26975RRRKKLR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00226DAPTransfer from AT1G70920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474836.11e-136PREDICTED: homeobox-leucine zipper protein ATHB-X-like
SwissprotQ8GXM71e-100ATHBX_ARATH; Homeobox-leucine zipper protein ATHB-X
TrEMBLA0A397YQU71e-126A0A397YQU7_BRACM; Uncharacterized protein
TrEMBLM4DI471e-126M4DI47_BRARP; Uncharacterized protein
STRINGBra016174.1-P1e-127(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133801624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70920.13e-91homeobox-leucine zipper protein 18
Publications ? help Back to Top
  1. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]