PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC156_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 188aa    MW: 21297.2 Da    PI: 10.0885
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC156_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-051941123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ C + F++   L  H+++H
  RrC156_p4 19 YTCSFCRREFRSAQALGGHMNVH 41
               9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.96E-71645No hitNo description
Gene3DG3DSA:3.30.160.607.3E-41744IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00611941IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-51942IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2191946IPR007087Zinc finger, C2H2
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MNHYKNYEAG LIPWPPKNYT CSFCRREFRS AQALGGHMNV HRRDRAKLRQ IPSWLFEPHH  60
HTPVRNPNPS LNSSSSSSSS SSSITLAHHE PSLINQISKT TPFSPTRFDV LDYTISYGGL  120
MVEKEKNNSN VCSRDRRNRA IDSSRAAKCE ISRGDLMNKK DGVMGLELGM SLRNPKQVLD  180
LELRLGCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-131441229superman protein
2l1o_A5e-131441229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142836.11e-107PREDICTED: transcriptional regulator SUPERMAN
SwissprotQ9SLB81e-101ZFP11_ARATH; Zinc finger protein 11
TrEMBLA0A3P5YPF91e-106A0A3P5YPF9_BRACM; Uncharacterized protein
STRINGBra004692.1-P1e-107(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.11e-102zinc finger protein 11