PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1584_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 533aa    MW: 60042.7 Da    PI: 7.4303
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1584_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.81.6e-12241001295
                 HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3  12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  ++ l +p  f+ +h  +++    kt +l++  s ++W vk+  ++ +    +t+GW++F+ a++L+ gD+++F++++++ f  +v+
  RrC1584_p4  24 HTH-LNIPVAFFLKHvqESN-DHIKTAKLRTdASDETWLVKI--NGLR----FTDGWEDFAVAHELRIGDIIIFRHEEEMVF--HVT 100
                 444.99*********97333.34457777765999*******..5555....9**********************8877777..665 PP
2B358.61.1e-18160248695
                 ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 +++++l+ +rl++p +f +++g+++ ++k+++l +e+grsW+++++y+k s +++ + GW++F+ +ng+++g   +Fkl++ +++ +v++
  RrC1584_p4 160 VSPSSLRFDRLYVPISFSRSIGLDNMSGKEIILLNEEGRSWSLNITYTKASMQTLVGPGWRRFCVENGMNQGHQYTFKLVR-KSAPPVIR 248
                 3566777789********************************************************************998.77767766 PP
3B3642.3e-20268360599
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 +++s++l+++rl+l ++f+ ++g++   s ++tl++e+g +W++ l+y  + ++++l+ GWk F++ ng+k+gD+++Fk+++ ++ ++v+ ++++
  RrC1584_p4 268 FVSSNSLRNDRLYLQRNFVIANGLDRGFS-EITLKNERGGKWSLGLRYYDSLSHTYLGPGWKTFCQVNGIKAGDSFMFKVVE-TGDKPVLLLCSS 360
                 578999******************98776.******************99999**************************887.666789888875 PP
4B349.57.6e-16434530297
                 EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                 +kv++++ +lk++ l+lp +f++ +g++k++  +++l d++g + +v      +++ g + ++kGWkeF++a+g+k+g++++++l++  +e  +v+k++
  RrC1584_p4 434 VKVTLTPRALKTSKLMLPLDFTRVNGINKPG--KMILLDKDGVKKQVVDLLehNRNTGIMRIGKGWKEFCEAHGVKVGESFLLELIRAkEEVIPVLKFC 530
                 688999999*****************99766..7********55555433323777777***************************9867777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-219107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-199112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.8712105IPR003340B3 DNA binding domain
CDDcd100174.16E-1413100No hitNo description
SMARTSM010192.0E-1915105IPR003340B3 DNA binding domain
PfamPF023623.0E-72697IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.1E-17149247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-15150248IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.156155253IPR003340B3 DNA binding domain
CDDcd100172.95E-13155242No hitNo description
SMARTSM010192.3E-20156253IPR003340B3 DNA binding domain
PfamPF023628.5E-17160248IPR003340B3 DNA binding domain
PROSITE profilePS5086314.762264360IPR003340B3 DNA binding domain
SMARTSM010191.1E-24265361IPR003340B3 DNA binding domain
PfamPF023621.6E-18268360IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-17269363IPR015300DNA-binding pseudobarrel domain
CDDcd100174.60E-15270359No hitNo description
Gene3DG3DSA:2.40.330.101.6E-16275372IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-17425531IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-17429530IPR015300DNA-binding pseudobarrel domain
CDDcd100172.31E-14433522No hitNo description
SMARTSM010197.4E-22433533IPR003340B3 DNA binding domain
PROSITE profilePS5086311.857433532IPR003340B3 DNA binding domain
PfamPF023626.7E-15434530IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MADDKSLHSP NNPHFFQPLL PGFHTHLNIP VAFFLKHVQE SNDHIKTAKL RTDASDETWL  60
VKINGLRFTD GWEDFAVAHE LRIGDIIIFR HEEEMVFHVT ALGPSCCDIQ YSSASSHNIS  120
DDSEYQTNNT ENSSGEKRKR VKKSPRTKVD SSSDHFMAQV SPSSLRFDRL YVPISFSRSI  180
GLDNMSGKEI ILLNEEGRSW SLNITYTKAS MQTLVGPGWR RFCVENGMNQ GHQYTFKLVR  240
KSAPPVIRLS LAEPAPESSL HHSNYVGFVS SNSLRNDRLY LQRNFVIANG LDRGFSEITL  300
KNERGGKWSL GLRYYDSLSH TYLGPGWKTF CQVNGIKAGD SFMFKVVETG DKPVLLLCSS  360
NRGKTPSECP EDSYDVDSLS SDTSSGDDSR EESQESEEES LGDESSSQER FGMVKRENSS  420
RCRASSSYSQ DPYVKVTLTP RALKTSKLML PLDFTRVNGI NKPGKMILLD KDGVKKQVVD  480
LLEHNRNTGI MRIGKGWKEF CEAHGVKVGE SFLLELIRAK EEVIPVLKFC TKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018493215.10.0PREDICTED: B3 domain-containing protein REM17-like isoform X2
SwissprotQ84WP31e-154REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A397XYM30.0A0A397XYM3_BRACM; Uncharacterized protein (Fragment)
STRINGBo5g044980.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-144B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]