PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15896_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YA
Protein Properties Length: 116aa    MW: 12886.6 Da    PI: 10.6224
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15896_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA39.61.7e-123253658
    CBFB_NFYA 36 kpylheSRhkhAlrRpRgsgGrF 58
                 +py+h+SRh hAlrRpRgsgGrF
  RrC15896_p2  3 QPYMHHSRHLHALRRPRGSGGRF 25
                 89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115218.907128IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.7E-9325IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MLQPYMHHSR HLHALRRPRG SGGRFLNTKS QNNAKKADGT KQTMPQPQPQ RSNSQDSDVL  60
HPESMTMNLS NRLGSEVTSM NYFLGSSLHP LGGMVMPSKW ITATAAMDNG CCNFKT
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891931e-119AC189193.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003A10, complete sequence.
GenBankKC7876791e-119KC787679.1 Brassica napus transcription factor subunit NF-YA2 (NF-YA2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013735933.12e-67nuclear transcription factor Y subunit A-2
SwissprotQ9M9X45e-60NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLA0A078FP685e-66A0A078FP68_BRANA; BnaC05g19190D protein
STRINGBo3g060160.19e-66(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.12e-62nuclear factor Y, subunit A2
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  2. Nasim Z,Fahim M,Ahn JH
    Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
    Front Plant Sci, 2017. 8: p. 191
    [PMID:28261246]
  3. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]