PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15967_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 244aa    MW: 28240.8 Da    PI: 5.0162
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15967_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57354.82.7e-1729109387
       DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 
                  ++r+ws+  e+    G++d+++++++ +++d+d fy+++k+s + +v+k+ql++Ki +LK + + k++ + +g+  sf+++h ++
  RrC15967_p1  29 SNRIWSSAEEL----GIMDYQNEHKSTYYSDWDSFYHYIKDSFETNVTKQQLIDKIVELKTRLTWKQSSSGDGEGHSFNNPHVDE 109
                  78********9....999***************************************************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.2E-1330109IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MFQANVKGDL KSTEAMRQSL VVSSPAPASN RIWSSAEELG IMDYQNEHKS TYYSDWDSFY  60
HYIKDSFETN VTKQQLIDKI VELKTRLTWK QSSSGDGEGH SFNNPHVDEF EGLFELQKCV  120
ETVLDLMFCI KSKEITDVEK DKRVETDEKK KRYEIMVNAE RDQKSEGDGV DEFCDLREVL  180
EMGTLFQSLG GYEKKMLVQN LKNLGSQRRK ELTDEWKSLL DEELRLKIKK QSFSTKLAYA  240
GLPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479912.16e-69PREDICTED: GLABROUS1 enhancer-binding protein-like 2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14516816
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14280.18e-21DNA-binding storekeeper protein-related