PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC15983_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 321aa MW: 36113.5 Da PI: 6.9337

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC15983_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	38.9	2.6e-12	43	81	90	128
NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ +++++g+kktLv+y+grap+g t Wvmheyrl RrC15983_p1 43 GQIKTGGDRAIGTKKTLVYYRGRAPDGIGTGWVMHEYRL 81 3444447777***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	18.696	1	105	IPR003441	NAC domain
Pfam	PF02365	3.2E-6	36	81	IPR003441	NAC domain
SuperFamily	SSF101941	1.29E-16	42	105	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MPPVSLPPGF SVNHGTCPST RQKVPQWFKN KPGNKRRLLE SNGQIKTGGD RAIGTKKTLV 60 YYRGRAPDGI GTGWVMHEYR LDETECEPTA FGMQDAYALC RVFKKIIIEA KPRLDQHQHQ 120 HYVNTRSNIS GNSSVDVCSD LEISSSTHVT HQVLPNYNNA TETQQGLETQ TQSVIVMTEY 180 MSQGMPTGFS SYVSPYGSYL TQPKANTEIE CGMLQRQMSL PPLRVENSRV QTSDFSNGMN 240 QNSGECGFED FTFAASNLNQ LYNNDVDDNI IHFGSLDEQF LNAGNTTWMR MSNENLKQVI 300 NKLYIISYLI SVNSSFIYSR L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013626928.1	1e-129	PREDICTED: NAC domain-containing protein 86-like isoform X2
Refseq	XP_013680579.1	1e-129	NAC domain-containing protein 86 isoform X2
Swissprot	Q9FFI5	1e-100	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A0D3B1L3	1e-127	A0A0D3B1L3_BRAOL; Uncharacterized protein
STRING	Bo3g012450.1	1e-128	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4411	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	1e-102	NAC domain containing protein 86

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]