PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16060_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 255aa    MW: 29713.7 Da    PI: 9.5163
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16060_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.8e-1369118153
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                  +r++h  +Er+RR+++N+ ++ L+ ++P +   +s++ + a+i e +++Y+k+
  RrC16060_p1  69 QRMNHIVVERNRRRQMNHFLSILKAMMPLS---YSQRSDQASIIEGTINYLKK 118
                  79****************************...******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.12E-1266124No hitNo description
SuperFamilySSF474598.64E-1667137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.62768119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-1069118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-1169132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-874125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MFQQEYPYEF SLDKTSSSYE VLDYSIAEQQ SLSTENLSLQ ARGGFGQEPP RKKRKRRRSE  60
QRIEEKENQR MNHIVVERNR RRQMNHFLSI LKAMMPLSYS QRSDQASIIE GTINYLKKQE  120
QRLQSFEAQL KPTKPHQLTN IFSDFFNFPQ YSTATASSRH HHNGLAVVAE VEVTMVEMHA  180
NIKVLTKTRP RLLFKMINEF DSLGLTIFHL NLTASNNMSL FTFSVKVDED CHLTTTANEV  240
AHAVHEVVSR IHKEH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15055RKKRKR
25156KKRKRR
35157KKRKRRR
45257KRKRRR
55357RKRRR
65358RKRRRS
76980RMNHIVVERNRR
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437026.11e-174PREDICTED: transcription factor bHLH99
SwissprotQ9FKQ61e-103BH099_ARATH; Transcription factor bHLH99
TrEMBLA0A0D2ZQ381e-152A0A0D2ZQ38_BRAOL; Uncharacterized protein
STRINGBo00615s100.11e-153(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149591619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65320.11e-84bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]