PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16090_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 109aa    MW: 12185.4 Da    PI: 9.6571
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16090_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.11.1e-1333105270
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekk 70 
                  W+++ + +Liea  ++  +l+rg+l++++W+ev++++       g  ++ +qCk++++ l+k+yk +k+  ++
  RrC16090_p1  33 WSEDATATLIEAWGDRYVHLSRGNLRQNDWKEVADAVnsrhGGNGRPKTDVQCKNRIDTLKKKYKTEKAKPSS 105
                  *************************************9744445567799*****************987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.5E-2331108No hitNo description
Gene3DG3DSA:1.10.10.600.00133100IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
METTPETQPK SQSQSTGGGG SSHRVPPGRE DWWSEDATAT LIEAWGDRYV HLSRGNLRQN  60
DWKEVADAVN SRHGGNGRPK TDVQCKNRID TLKKKYKTEK AKPSSSSWC
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013647509.18e-58trihelix transcription factor ASIL2-like
SwissprotQ9LJG83e-30ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A397ZGB44e-52A0A397ZGB4_BRACM; Uncharacterized protein
TrEMBLA0A3P5YYR34e-52A0A3P5YYR3_BRACM; Uncharacterized protein
TrEMBLM4F1C04e-52M4F1C0_BRARP; Uncharacterized protein
STRINGBra034866.1-P6e-53(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.12e-47sequence-specific DNA binding transcription factors