PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16134_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ZF-HD
Protein Properties Length: 231aa    MW: 26228.1 Da    PI: 10.3869
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16134_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer93.81.4e-2952106358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                  +++YkeC+kNhAa +Ggh+vDGC+Efmp  geegt+ alkCaAC+CHR+FHR+ev 
  RrC16134_p1  52 AAKYKECQKNHAALTGGHVVDGCCEFMPG-GEEGTQGALKCAACNCHRSFHRKEVY 106
                  689*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.3E-2753105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.6E-2654105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2254105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.41555104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.71E-18156225IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-26157225IPR009057Homeodomain-like
PROSITE profilePS500719.345162226IPR001356Homeobox domain
TIGRFAMsTIGR015658.0E-25164221IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEHGGSCNAI TTTTITLKAK PHTNPDPKAK PVSDPFLIKK ENQKPTTRGD QAAKYKECQK  60
NHAALTGGHV VDGCCEFMPG GEEGTQGALK CAACNCHRSF HRKEVYGHRN STREELISPA  120
VYKAIQPRGV YPTSEIGRRT SSSSEDMKKI LNHNTDGKGL MRKKKRVRTK ISEEQKKKMK  180
EFAERLGWSM QKKDEEEIDK FCRTVNLRRQ VFKVWMHNNK QAMKRNGNLN L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-171652221875ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163177KKRVRTKISEEQKKK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891891e-146AC189189.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002E24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480792.11e-167PREDICTED: zinc-finger homeodomain protein 7-like
RefseqXP_018480793.11e-167PREDICTED: zinc-finger homeodomain protein 7-like
RefseqXP_018480794.11e-167PREDICTED: zinc-finger homeodomain protein 7-like
SwissprotQ9SVL01e-121ZHD7_ARATH; Zinc-finger homeodomain protein 7
TrEMBLA0A398A4T81e-151A0A398A4T8_BRACM; Uncharacterized protein
STRINGBo7g100590.11e-151(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138541525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.11e-118homeobox protein 28