PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1613_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 407aa MW: 45826.5 Da PI: 7.7252

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1613_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.2	1.4e-31	80	133	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH rF++ave+LGG+++AtPk +l+lm+vkgL ++hvkSHLQ+YR+ RrC1613_p1 80 PRLRWTPELHLRFLQAVERLGGPDRATPKLVLQLMNVKGLGIAHVKSHLQMYRS 133 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.6E-30	76	134	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.139	76	136	IPR017930	Myb domain
SuperFamily	SSF46689	2.87E-15	77	135	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-23	80	135	IPR006447	Myb domain, plants
Pfam	PF00249	8.3E-9	81	132	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MRSSSQSSEN SKTCPSNKFK TTTKKEDNRD DEDEDEEERS VDQSPSRNSY VEESGSHHHN 60 NDQIKKNGGS VRPYNRSKTP RLRWTPELHL RFLQAVERLG GPDRATPKLV LQLMNVKGLG 120 IAHVKSHLQM YRSKKTDDPN QGDQGFSFEH GGGYTCNLGQ LPMLQSFDQR PSTSLGYGGG 180 SWIDHRRQVY RSPWRGLTAR DSTRTRQTLF SSQSGERFRG ISNNILDDKN KTILFRINSH 240 EAAQENNGVA EAVPSIHRSF LEGMKTLSKS WGQSPSSIPN SSTASRPQDL CATTLSSNQK 300 ENLRVAEETE NVLKRKRLSL SDDCNKSDQD LDLSLSLKVP RTHNNLGDFL LEDEEKEHDD 360 HEDIKGLSLS LSSSSSSKFD QVIRKEDQND PKTRNISVLA SPLDLTL

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MRSSSQSSEN SKTCPSNKFK TTTKKEDNRD DEDEDEEERS VDQSPSRNSY VEESGSHHHN  60
NDQIKKNGGS VRPYNRSKTP RLRWTPELHL RFLQAVERLG GPDRATPKLV LQLMNVKGLG  120
IAHVKSHLQM YRSKKTDDPN QGDQGFSFEH GGGYTCNLGQ LPMLQSFDQR PSTSLGYGGG  180
SWIDHRRQVY RSPWRGLTAR DSTRTRQTLF SSQSGERFRG ISNNILDDKN KTILFRINSH  240
EAAQENNGVA EAVPSIHRSF LEGMKTLSKS WGQSPSSIPN SSTASRPQDL CATTLSSNQK  300
ENLRVAEETE NVLKRKRLSL SDDCNKSDQD LDLSLSLKVP RTHNNLGDFL LEDEEKEHDD  360
HEDIKGLSLS LSSSSSSKFD QVIRKEDQND PKTRNISVLA SPLDLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-17	81	135	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-17	81	135	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-17	81	135	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-17	81	135	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00301	DAP	Transfer from AT2G40260	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018458721.1	0.0	PREDICTED: uncharacterized protein LOC108829586
TrEMBL	A0A0D3BQA8	0.0	A0A0D3BQA8_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6BI71	0.0	A0A3P6BI71_BRAOL; Uncharacterized protein
STRING	Bo4g025360.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9359	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	1e-178	G2-like family protein