PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16243_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family RAV
Protein Properties Length: 347aa    MW: 38676.5 Da    PI: 10.0242
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16243_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.19e-1365113155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s++kGV   + +grW A+I++      +kr++lg+f  +eeAa+ ++ a  +++g
  RrC16243_p1  65 SRFKGVVPQP-NGRWGAQIYEK-----HKRVWLGTFNEEEEAARVYDVAVHRFRG 113
                  689***9788.8*********3.....5***********************9998 PP
2B3100.31.2e-31195296198
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+ tpsdv+k++rlv+pk+ ae+h      g++  +++ l++ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD + F++++ ++++l
  RrC16243_p1 195 FEKTVTPSDVGKLNRLVIPKHQAEKHfplplsGSV--KGTLLSFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISFRRSNGQDQQL 290
                  99****************************96655..6779************************************************987799999 PP

                  EEEEE- CS
           B3  93 vvkvfr 98 
                  ++++ +
  RrC16243_p1 291 YIGWKS 296
                  999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-1765122IPR016177DNA-binding domain
PfamPF008473.5E-765113IPR001471AP2/ERF domain
CDDcd000182.83E-2465123No hitNo description
PROSITE profilePS5103219.57266121IPR001471AP2/ERF domain
SMARTSM003801.0E-2766127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-1966121IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.5E-39188298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-31192296IPR015300DNA-binding pseudobarrel domain
CDDcd100172.66E-29194285No hitNo description
PfamPF023626.4E-28195297IPR003340B3 DNA binding domain
PROSITE profilePS5086313.987195298IPR003340B3 DNA binding domain
SMARTSM010192.0E-25195298IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEALSSVDES STSTVSIHTP AKIPPPPRTA NSSSPASLYR MGSGSSVVLD SENGVEAESR  60
KLPSSRFKGV VPQPNGRWGA QIYEKHKRVW LGTFNEEEEA ARVYDVAVHR FRGPDAVTNF  120
KPHLTLGNGD GDDGEEVEFL NAHSKYEIVD MLRKHTYREE LEQRKRKRNG NGDAKETALA  180
NVTVGTGFKT ATSLFEKTVT PSDVGKLNRL VIPKHQAEKH FPLPLSGSVK GTLLSFEDVN  240
GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK RLCAGDLISF RRSNGQDQQL YIGWKSKAGS  300
DQDTGRVVVR LFGVDIASVK SRNDVVVKED TEMPLRSNKK QGLVTTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-6419130410124DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434660.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor ARF14-like
SwissprotQ9LS061e-170RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLA0A0D3AVW70.0A0A0D3AVW7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DQU20.0A0A3P6DQU2_BRAOL; Uncharacterized protein
STRINGBo2g138650.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.11e-163ethylene response DNA binding factor 3