PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16317_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 162aa    MW: 17971.2 Da    PI: 10.7775
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16317_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-1982135255
          AP2   2 gykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr+++ +g+W+AeIr+ ++ +g r  r++lg+f taeeAa a+++a+ +l g
  RrC16317_p1  82 KFRGVRQRP-WGKWAAEIRCGKSrDG-RpLRIWLGTFETAEEAALAYDKAAVQLIG 135
                  89*******.**********655577.78**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.2E-401161IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000184.80E-2482142No hitNo description
PROSITE profilePS5103221.56282143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-2782143IPR001471AP2/ERF domain
SMARTSM003803.9E-2982149IPR001471AP2/ERF domain
PfamPF008472.2E-1282134IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-1982144IPR016177DNA-binding domain
PRINTSPR003671.7E-118394IPR001471AP2/ERF domain
PRINTSPR003671.7E-11109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MKRIVRISFT DAEATDSSSS EEDEQTNAAE SPPRRRRGKR FVNEIVIDPS DSSANKNNRD  60
RGKTRFKIRI PARVDNKKKR EKFRGVRQRP WGKWAAEIRC GKSRDGRPLR IWLGTFETAE  120
EAALAYDKAA VQLIGTDAVT NFGCSKAVVK EGSEAGTSAG GA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1879142262ATERF1
3gcc_A3e-1879142262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449690.11e-107PREDICTED: ethylene-responsive transcription factor ERF069-like
SwissprotQ9C9955e-54ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A0D3DR008e-84A0A0D3DR00_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FVU78e-84A0A3P6FVU7_BRAOL; Uncharacterized protein
STRINGBo8g071630.11e-84(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22985.13e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]