PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1639_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 168aa    MW: 18524.4 Da    PI: 4.7769
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1639_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.18.1e-132987563
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                ++ +r+ +NRe+ArrsR RK++ ++ L+  + +L++ N++    l   ++++ k ++e+
  RrC1639_p1 29 RKRKRMLSNRESARRSRMRKQKHVDDLTAQINQLSSDNRQILTSLTATSELYMKIQAEN 87
                57899*********************************999999999888888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-162589IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.0E-102576No hitNo description
PROSITE profilePS5021710.32790IPR004827Basic-leucine zipper domain
PfamPF001703.6E-102987IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.64E-122980No hitNo description
CDDcd147022.17E-213081No hitNo description
PROSITE patternPS0003603247IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MASSSSTYRS SSSSDGGNPS DSAVTVDERK RKRMLSNRES ARRSRMRKQK HVDDLTAQIN  60
QLSSDNRQIL TSLTATSELY MKIQAENSVL TAQMAELSTR LESLNEIVDL VTTTNGGVDQ  120
IDGCGFDDRT AGINCDGYYD DMMMSGVNHW GGSVYSNQPI MANDINMF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12849RKRKRMLSNRESARRSRMRKQK
24148RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to specific DNA sequences in target gene promoters. BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000250|UniProtKB:O65683, ECO:0000269|PubMed:29348240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00267DAPTransfer from AT2G18160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325501e-174AC232550.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011J16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433382.11e-121PREDICTED: bZIP transcription factor 2
SwissprotQ9SI154e-92BZIP2_ARATH; bZIP transcription factor 2
TrEMBLA0A3P6ES751e-112A0A3P6ES75_BRAOL; Uncharacterized protein
STRINGBo7g011520.11e-112(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18160.11e-88basic leucine-zipper 2
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]