PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16491_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 262aa    MW: 29571 Da    PI: 9.7224
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16491_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix933e-2956140187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+ aL+++r++m+ ++r++++k+plWeevs+km e g++r++k+Ckek+en+ k++k++keg+ ++++++  t+++fdqlea
  RrC16491_p2  56 RWPRQETVALLKIRSDMGLAFRDASAKGPLWEEVSRKMGELGYTRNAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFDQLEA 140
                  8********************************************************************975544..6*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.6E-453115IPR001005SANT/Myb domain
CDDcd122031.36E-2355120No hitNo description
PROSITE profilePS500907.1255113IPR017877Myb-like domain
PfamPF138375.8E-1955141No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEFGGVTTTT SAATAEAPPL PQSNDAAATE AAAAAATVGA FEVSEEMNDR GFGGNRWPRQ  60
ETVALLKIRS DMGLAFRDAS AKGPLWEEVS RKMGELGYTR NAKKCKEKFE NVYKYHKRTK  120
EGRTGKSEGK TYRFFDQLEA LESHQHQQQH QQPLQPQPPL RPHNNNNSSM FSTPPPPVTT  180
IIPPTTTPLF PNISGDFLSE DNSTSSSSSY STSSDADIGR NKKKRKRKWK EFFERLMKQV  240
VDKQEELQRQ FLEAVEKRER ER
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221227KKKRKRK
2222227KKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2301522e-99AK230152.1 Arabidopsis thaliana mRNA for hypothetical protein, partial sequence., clone: RAFL22-85-G13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446456.11e-118PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391177e-55TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A078I5012e-96A0A078I501_BRANA; BnaA02g17810D protein
TrEMBLA0A397YSK74e-96A0A397YSK7_BRACM; Uncharacterized protein
STRINGBostr.20129s0126.1.p2e-98(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.15e-79Trihelix family protein