PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1658_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 494aa    MW: 55419.7 Da    PI: 7.0718
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1658_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.83.6e-10254310155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k+++
  RrC1658_p3 254 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWN 310
                 57*******************4444.2344336655.7799999*************97 PP
2AP249.97.7e-16353404155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  RrC1658_p3 353 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 404
                 57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.96E-17254320No hitNo description
PfamPF008476.1E-8254310IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-13254319IPR016177DNA-binding domain
SMARTSM003801.8E-18255324IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-10255318IPR001471AP2/ERF domain
PROSITE profilePS5103216.753255318IPR001471AP2/ERF domain
PRINTSPR003674.0E-6256267IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18353413IPR016177DNA-binding domain
CDDcd000185.78E-11353412No hitNo description
PfamPF008473.2E-10353404IPR001471AP2/ERF domain
PROSITE profilePS5103219.111354412IPR001471AP2/ERF domain
SMARTSM003807.9E-31354418IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-18354412IPR001471AP2/ERF domain
PRINTSPR003674.0E-6394414IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MHARQVETSQ FVPYDASSAA SSSPYLLDNF YGWTNQKPQE FFKDEAQIAA SMADSTILTT  60
FVDPQTHSHN HIPKLEDFLG DVRYSDNSQT ETQDSSSLTH IYDPRHQHNQ NQTGFYSDHS  120
HEFKTMAGYQ TAFSTNSGSE VEDSASIGRT HLAGEYLGHV VESSGGPELG FSGGANTGGA  180
LSLGVNVNNN ANHRTSDDHN QITEHHYRGN TNGERLNNSS QEKTISEKEK PVVAVETSDC  240
SNKKIADTFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQARKGRQGG YDKEDKAARA  300
YDLAALKYWN ATATTNFPIT NYSKELEEMK HMTKQEFIAS LRRKSSGFSR GASIYRGVTR  360
HHQQGRWQAR IGRVAGNKDL YLGTFATEEE AAEAYDIAAI KFRGINAVTN FEMNRYDVEA  420
IMKSALPIGG AAKRLKLSLE AAASSEQKQV LGQHQLHHFQ QQQQQQQQQQ LNHSSMGLMA  480
PNQAEFFLWP NQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9741970.0AY974197.1 Arabidopsis thaliana clone At5g10510 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450749.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLM4EIG90.0M4EIG9_BRARP; Uncharacterized protein
STRINGBra028584.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]