PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1659_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HD-ZIP

Protein Properties

Length: 199aa MW: 22660.8 Da PI: 8.8963

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1659_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.1	1.5e-18	62	116	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Le+ F++n++++ +++e LA++l L rq+ vWFqNrRa+ k RrC1659_p1 62 RKKLRLTKEQSRLLEDSFRQNHTLNPKQKETLAERLMLRPRQIEVWFQNRRARSK 116 78889************************************************98 PP
2	HD-ZIP_I/II	117.4	8e-38	62	150	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL+ eveeLr+ RrC1659_p1 62 RKKLRLTKEQSRLLEDSFRQNHTLNPKQKETLAERLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNNRLHIEVEELRA 150 69*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-18	47	112	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.94E-19	47	119	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.329	58	118	IPR001356	Homeobox domain
SMART	SM00389	1.1E-17	60	122	IPR001356	Homeobox domain
CDD	cd00086	6.02E-16	61	119	No hit	No description
Pfam	PF00046	8.0E-16	62	116	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	93	116	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.1E-9	118	152	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	5.5E-19	118	161	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MAILPENSSN LDLTISTPGF SSSPRSDEGS GGEREQLKLD MNRLPSSDED EELSHGGSAP 60 PRKKLRLTKE QSRLLEDSFR QNHTLNPKQK ETLAERLMLR PRQIEVWFQN RRARSKLKQT 120 EMECEYLKRW FGSLTEQNNR LHIEVEELRA MKVGSSTTTS ASSLTMCPRC ERVTTAAIPS 180 MAVVDVPAKK MIPPQERLH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	118	RRARSKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353448	1e-167	AK353448.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-G16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018455112.1	1e-136	PREDICTED: homeobox-leucine zipper protein ATHB-17-like
Refseq	XP_018455149.1	1e-136	PREDICTED: homeobox-leucine zipper protein ATHB-17-like
Swissprot	Q8S9N6	1e-119	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	D7LLR2	1e-121	D7LLR2_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_5000031	1e-122	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4890	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	1e-115	homeobox-leucine zipper protein 17

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]