PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC16619_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 272aa MW: 30808.1 Da PI: 8.1114

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC16619_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.2	6.2e-08	79	124	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRd++N+ f eL l ++ +K +Ka+iL +++ +k+L RrC16619_p1 79 KADREKIRRDKLNEQFLELGNALDPN----RPKSDKASILIDTIQTLKNL 124 5679*****************997....79**********999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.02E-5	71	128	No hit	No description
PROSITE profile	PS50888	11.731	74	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-13	77	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-5	79	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-6	80	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-12	82	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0009507	Cellular Component	chloroplast
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MVARGEHKLL ICLVDVHHPL SPRFRKRVYY FAMEQTKKLK TSSELSLSDE SSASSSSSIR 60 PEKMVEMKKE SVSCRNIHKA DREKIRRDKL NEQFLELGNA LDPNRPKSDK ASILIDTIQT 120 LKNLMTQVDR LKAEHVTLSQ ESRELVQEKS ELREEKTSLK SDIEILNAQY QHRVRSMVPW 180 IPHYTYPVPL VAITQGPVSA LPFPLHGTQN PAPSPNSCST FMPYSAPLSP KTEQKDDVGL 240 ELELNIHASS SAQQVSDFFN SITIDQRDLS VA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018478868.1	1e-141	PREDICTED: transcription factor bHLH11
Swissprot	Q8W2F2	5e-78	BH011_ARATH; Transcription factor bHLH11
TrEMBL	A0A0D3DHX8	1e-121	A0A0D3DHX8_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6F6D0	1e-121	A0A3P6F6D0_BRAOL; Uncharacterized protein
STRING	Bo7g117760.1	1e-121	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36060.2	9e-81	bHLH family protein

Publications ? help Back to Top
Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates. Genet. Res., 2006. 88(1): p. 45-56 [PMID:17014743] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786] Tanabe N, et al. The basic helix-loop-helix transcription factor, bHLH11 functions in the iron-uptake system in Arabidopsis thaliana. J. Plant Res., 2019. 132(1): p. 93-105 [PMID:30417276]