PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1678_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 287aa MW: 31047.3 Da PI: 5.2597

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1678_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.1	4.6e-34	15	69	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl RrC1678_p2 15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 69 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.303	12	72	IPR017930	Myb domain
SuperFamily	SSF46689	6.27E-18	14	69	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-32	14	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-25	15	70	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-9	17	68	IPR001005	SANT/Myb domain
Pfam	PF14379	2.1E-23	102	147	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MEADDGGNNS GHASKQRLRW THELHERFVD AVAQLGGPDR ATPKGVLRVM GVQGLTIYHV 60 KSHLQKYRLA KYLPDSSSEG KKTDKKESGD VLSGLDGSPG TQITEALKLQ MEVQKRLHEQ 120 LEVQRQLQLR IEAQGKYLKK IIEEQQRLSG ELGESSGPVT GESDPATPAP TSEFPLQGKS 180 GKECEPDKSL SVEESHSSYR EALTPDSGCN IGSQDESAGE ERSSKKPRLM RGGAAGYTSE 240 MEVAHPILES GLNASYHQSD HALAFDVPST SLLGAENGLD SVSGDDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-24	15	72	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-24	15	72	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-24	15	72	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-24	15	72	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-24	15	72	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-24	15	72	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-24	15	72	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-24	15	72	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF594406	0.0	KF594406.1 Suaeda glauca MYB transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018439269.1	0.0	PREDICTED: myb family transcription factor PHL7-like
Swissprot	Q9SJW0	1e-180	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A397Z5S7	0.0	A0A397Z5S7_BRACM; Uncharacterized protein
TrEMBL	M4E803	0.0	M4E803_BRARP; Uncharacterized protein
STRING	Bra024909.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8753	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-167	G2-like family protein