PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16954_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 359aa    MW: 40870.9 Da    PI: 7.3682
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16954_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.3e-19696198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 ffk++   ++++s  +++p ++ +e  ++   +kt  l+  + g  W+v +   k++g++++++GW++Fv++n+L++gD+++F +dg+++f  +v++f 
  RrC16954_p1  6 FFKIF--LSHFSSESMMIPASYYDELPLV--LPKTAHLQGsTGGCFWKVAM--FKRRGEVYFGQGWSKFVEDNRLRDGDVMTFVYDGSRSF--TVSIFG 96
                 88888..89999999*********99998..8899****95556*******..99999***************************998888..999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-21496IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-15495No hitNo description
PROSITE profilePS5086313.408498IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.7E-20496IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-15695IPR003340B3 DNA binding domain
SMARTSM010192.5E-21698IPR003340B3 DNA binding domain
SuperFamilySSF1019361.57E-6258343IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-4259344IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.4264356IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MALPGFFKIF LSHFSSESMM IPASYYDELP LVLPKTAHLQ GSTGGCFWKV AMFKRRGEVY  60
FGQGWSKFVE DNRLRDGDVM TFVYDGSRSF TVSIFGGSRG CAEVRAVAQV ISVDDDDDDD  120
DDKEDTNTSS ERDMSQTVPS SRNQEDSSIV EPEVAQRVPR TRNKGKKRVV VAKKRLVVQD  180
SDESFVSEDS NSMSDDSSYS PPDEDTLLDV TPKVTNSRKK GELRSVNSYV GSTSNISRSV  240
SSRKRQSTIK NPEVYLDDPE NVCFETIVKN RIYELTVPNQ IVKDYCLKFQ DYVCYIDNHR  300
NGKLEARAAT WQDRRVSIKK WERIVQRNAL KKGDRLLCEL FRKEGLVYAI KIHFVNTTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A5e-1369611100At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469476.10.0PREDICTED: B3 domain-containing protein At4g34400-like
TrEMBLA0A0D3A3J40.0A0A0D3A3J4_BRAOL; Uncharacterized protein
STRINGBo1g016660.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.18e-42B3 family protein