PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16963_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 137aa    MW: 15767.4 Da    PI: 9.4959
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16963_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.3e-201970256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +++GVr+++ +g+++AeIrdps ng  +r +lg+f tae+Aa+a+++a+ +l+g+
  RrC16963_p1 19 RFRGVRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEDAARAYDRAAFNLRGH 70
                 69*******.**********98887..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.41E-171878No hitNo description
PfamPF008474.0E-141970IPR001471AP2/ERF domain
PROSITE profilePS5103224.5131977IPR001471AP2/ERF domain
SMARTSM003801.1E-361983IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-231978IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-311979IPR001471AP2/ERF domain
PRINTSPR003676.4E-112031IPR001471AP2/ERF domain
PRINTSPR003676.4E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MEGPNRRSNS QAQDDKQARF RGVRRRPWGK FAAEIRDPSR NGARLWLGTF ETAEDAARAY  60
DRAAFNLRGH LAILNFPNEY YSRMDDCALR PPYSSSSSSG STSTGVSRQN PREVFEFEYL  120
DGRVLEELLD SEERKKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-311612411114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489555.11e-96PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC55e-69ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1J3H8J22e-74A0A1J3H8J2_NOCCA; Uncharacterized protein
STRINGXP_010512193.12e-74(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.18e-58ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]