PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC16_p12

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

EIL

Protein Properties

Length: 499aa MW: 56708.9 Da PI: 4.5102

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC16_p12	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	147	2.6e-45	41	143	1	109
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekve 100 e+l++rmwkd+++lkr+ker+k ++ t++++ +k+++qa+rkkmsraQDgiLkYMlk mevc+++ fvYgiipekgkpv+g+sd++raWWkekv+ RrC16_p12 41 EDLERRMWKDRIRLKRIKERTKTGA---SQ-TKETQPKKISDQAQRKKMSRAQDGILKYMLKLMEVCKVRCFVYGIIPEKGKPVSGSSDNIRAWWKEKVS 136 89******************854...33.6777889***********************************************************9 PP XXXXXXXXX CS EIN3 101 fdrngpaai 109 + g+ + RrC16_p12 137 DN--GASNV 143 85..45555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	1.5E-43	41	145	No hit	No description
Gene3D	G3DSA:2.130.10.10	1.0E-4	451	499	IPR015943	WD40/YVTN repeat-like-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MGGGDLIMSV ADIRMENEPD DLASDNVAAE IDVSDEEIDA EDLERRMWKD RIRLKRIKER 60 TKTGASQTKE TQPKKISDQA QRKKMSRAQD GILKYMLKLM EVCKVRCFVY GIIPEKGKPV 120 SGSSDNIRAW WKEKVSDNGA SNVTETHRRG NNNAERRKTV VDSDSDYDVD GTEEASGSVS 180 SKDNRRKKTQ KEQPTATSQP VRDQDKAEKH RRRKRPRRTQ EEEQTEEAEQ RNSLPDMNHV 240 GAPLLEYNIS GTTHQQEEGV LEPNIALVPE ENGLELVVPE FSNNYAYLPP VSGQAMMHVD 300 ERPMLYEPNP NQELQFGSGY NFYNPSAVFV HNQEEHTQIE MNAQAPPHNY GFEAPGGVLQ 360 PHGNEDSVTG RDLPPQFQSD QDKLLDGNIL SPFDDLAFDS STFYSGFDSY GAFDEECLSW 420 ENSVCVFCKL TLGFWKGEYE LDYEIFFTCF AKMVDVWDYI SGKVKKDLQY QAEETLMMHD 480 DLVLCIDLSR DSEMLASGS

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MGGGDLIMSV ADIRMENEPD DLASDNVAAE IDVSDEEIDA EDLERRMWKD RIRLKRIKER  60
TKTGASQTKE TQPKKISDQA QRKKMSRAQD GILKYMLKLM EVCKVRCFVY GIIPEKGKPV  120
SGSSDNIRAW WKEKVSDNGA SNVTETHRRG NNNAERRKTV VDSDSDYDVD GTEEASGSVS  180
SKDNRRKKTQ KEQPTATSQP VRDQDKAEKH RRRKRPRRTQ EEEQTEEAEQ RNSLPDMNHV  240
GAPLLEYNIS GTTHQQEEGV LEPNIALVPE ENGLELVVPE FSNNYAYLPP VSGQAMMHVD  300
ERPMLYEPNP NQELQFGSGY NFYNPSAVFV HNQEEHTQIE MNAQAPPHNY GFEAPGGVLQ  360
PHGNEDSVTG RDLPPQFQSD QDKLLDGNIL SPFDDLAFDS STFYSGFDSY GAFDEECLSW  420
ENSVCVFCKL TLGFWKGEYE LDYEIFFTCF AKMVDVWDYI SGKVKKDLQY QAEETLMMHD  480
DLVLCIDLSR DSEMLASGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018445748.1	1e-171	PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
Swissprot	O23116	1e-115	EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBL	A0A078FGC5	1e-151	A0A078FGC5_BRANA; BnaC06g23450D protein
TrEMBL	A0A3P6FXD3	1e-151	A0A3P6FXD3_BRAOL; Uncharacterized protein
STRING	XP_006390517.1	1e-149	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4658	25	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73730.1	1e-101	ETHYLENE-INSENSITIVE3-like 3

Publications ? help Back to Top
Frerigmann H,Gigolashvili T Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency. Front Plant Sci, 2014. 5: p. 626 [PMID:25426131] Zheng ZL,Zhang B,Leustek T Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing. Front Plant Sci, 2014. 5: p. 710 [PMID:25566284] Panda SK,Sunkar R Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling. Plant Signal Behav, 2015. 10(4): p. e1010916 [PMID:25912823] Wawrzyńska A,Sirko A EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor. Plant Sci., 2016. 253: p. 50-57 [PMID:27968996]