PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17018_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 482aa    MW: 54408.9 Da    PI: 6.7725
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17018_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.91.6e-127662396
                 .HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3 23 aeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                 +++h +       l + d s + W+vkl  ++++    l++GW+eF+ka+  ++gD +vF++dg++ f  +v++
  RrC17018_p1  7 LRNHTK------VLLISDASDKIWKVKL--EGNR----LAGGWEEFAKAHSFRDGDLLVFRHDGDEIF--HVSA 66
                 544443......477889**********..9998....************************998888..7665 PP
2B365.38.8e-21127224199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+ + +++++l ++rl l+k+f+    ++++++ ++ l + +gr+W++ l+ + +sg +++++GW +F++angL +gD++ Fkl + +e+++v+++++
  RrC17018_p1 127 FLRARVTPYSLIKDRLDLSKDFTVVSFNEHNKPCEIDLVNDKGRKWTLLLSKNTSSGVFYIRRGWVNFCSANGLSQGDICKFKLAE-DEERPVLRLCS 223
                  667788999*************7666444556669***************99999999*************************987.66669999998 PP

                  S CS
           B3  99 k 99 
                  +
  RrC17018_p1 224 S 224
                  6 PP
3B365.57.9e-21271368199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  f+++ ++++ l++g+l+++  f++e g+kk  s ++tl +++gr+W  +l+++++ g+  ++l+ GW+e++kang+k++D++v++l+  +++++v+k+
  RrC17018_p1 271 FLTIKLTPNRLQTGQLYISSVFINESGIKK--SGEITLLNQDGRKWPSYLQMTGQCGSewFYLRHGWREMCKANGVKVNDSFVLELIC-EDANPVLKF 365
                  6778889999*************9999885..459***************9966655556***************************9.9999***** PP

                  E-S CS
           B3  97 frk 99 
                  ++k
  RrC17018_p1 366 CSK 368
                  987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.323170IPR003340B3 DNA binding domain
CDDcd100171.02E-9665No hitNo description
SMARTSM010194.9E-6670IPR003340B3 DNA binding domain
SuperFamilySSF1019369.42E-12666IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-71064IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-111166IPR015300DNA-binding pseudobarrel domain
PfamPF023627.4E-19127224IPR003340B3 DNA binding domain
SMARTSM010199.4E-25127225IPR003340B3 DNA binding domain
PROSITE profilePS5086314.734127225IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-17129225IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.7E-17131224IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-17137222No hitNo description
Gene3DG3DSA:2.40.330.103.8E-18267368IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-18269368IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-14270367No hitNo description
PROSITE profilePS5086312.816271369IPR003340B3 DNA binding domain
PfamPF023622.4E-21271368IPR003340B3 DNA binding domain
SMARTSM010199.0E-25271369IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
RLGDEFLRNH TKVLLISDAS DKIWKVKLEG NRLAGGWEEF AKAHSFRDGD LLVFRHDGDE  60
IFHVSASPRS NSCDTSHHAS PSFVDTDDAE SDDEYSESDE EEEECDDDAG DILVNKKKKT  120
EGGFSCFLRA RVTPYSLIKD RLDLSKDFTV VSFNEHNKPC EIDLVNDKGR KWTLLLSKNT  180
SSGVFYIRRG WVNFCSANGL SQGDICKFKL AEDEERPVLR LCSSSNSHEE EEECLEADAA  240
KIGSVGGCSK EKRRLDECSK RKKKNNNPSK FLTIKLTPNR LQTGQLYISS VFINESGIKK  300
SGEITLLNQD GRKWPSYLQM TGQCGSEWFY LRHGWREMCK ANGVKVNDSF VLELICEDAN  360
PVLKFCSKVD NKGNGNRRAC KRRAHEEAPI VETEGRKRGR PRLSNRHATN SSHLRRTQQE  420
SCSVADQVAN VKLSILDTLN TVRQFRAELE AREKNLEATL LEVDSLGDRI LGISQSLTSN  480
NV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249262KEKRRLDECSKRKK
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00602PBMTransfer from AT4G31610Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447207.10.0PREDICTED: B3 domain-containing protein REM1-like
SwissprotO650981e-180REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLM4D1790.0M4D179_BRARP; Uncharacterized protein
STRINGBra010228.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-154B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]