PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC170_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 290aa    MW: 32971 Da    PI: 7.7997
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC170_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.32.6e-3221124199
                EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f+kv tpsdv+k++rlv+pk++ae++     ++ ++++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++d  ++ +l++ 
  RrC170_p1  21 FDKVVTPSDVGKLNRLVIPKQHAERYfpldnSSTNNKGLLLDFEDRTGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDPCNKDKLFID 120
                89***************************99556668889************************************************874477779999 PP

                EE-S CS
         B3  96 vfrk 99 
                ++r+
  RrC170_p1 121 WRRR 124
                9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.0E-4411129IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-3318127IPR015300DNA-binding pseudobarrel domain
CDDcd100174.96E-2619113No hitNo description
PfamPF023621.7E-2921124IPR003340B3 DNA binding domain
SMARTSM010194.8E-2421125IPR003340B3 DNA binding domain
PROSITE profilePS5086314.38121125IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNQENKKPVE EASSMEREHM FDKVVTPSDV GKLNRLVIPK QHAERYFPLD NSSTNNKGLL  60
LDFEDRTGNS WRFRYSYWNS SQSYVMTKGW SRFVKDKKLD AGDIVSFQRD PCNKDKLFID  120
WRRRPKIPDH HHHQFAGAMF PRFYSFPHPQ MPTSYESSHN LYHRFQRDLG VGYYPTAVIE  180
SVPVIMQRRE VQVANMASLR GEKRLRLFGV DMECGGGGGS VNSTEEESSS SGGSMSRGGI  240
SMSGVGSLLQ LRLVSSDDES LVAMEAASVD EDHHLFTKKG KSSLSFDLDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-63161273116B3 domain-containing transcription factor NGA1
5os9_B5e-63161273116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728770.0AC172877.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH042F19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488940.10.0PREDICTED: B3 domain-containing transcription factor NGA2
SwissprotQ9M2681e-175NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLA0A3P6FZJ90.0A0A3P6FZJ9_BRAOL; Uncharacterized protein
STRINGBra007646.1-P1e-177(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-161B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]