PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1713_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 197aa    MW: 22307.2 Da    PI: 9.1494
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1713_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-143881348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +++++Ed+l+++++++lG++ W++Ia +++ gRt+ +++ +w +yl
       RrC1713_p3 38 NFSKDEDDLILRLHALLGNR-WSLIAGRLP-GRTDTEIRIHWETYL 81
                     79******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.64E-152090IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-202885IPR009057Homeodomain-like
PROSITE profilePS5129423.5753185IPR017930Myb domain
SMARTSM007173.1E-143583IPR001005SANT/Myb domain
PfamPF002491.4E-133881IPR001005SANT/Myb domain
CDDcd001679.94E-123881No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MNIVSVRALS PPSRLLHRAE RCRVGGRNYE KPELKQSNFS KDEDDLILRL HALLGNRWSL  60
IAGRLPGRTD TEIRIHWETY LKRKLMKMGI DPTNHRLYHH ANYISRQYLS SSHKKLETDI  120
VSDQSSSVSE SYDMRILPVS STNCFDDSAS SSAGHSRLPD LNISLVPAET VVSWPGCGLQ  180
ESSSNGSTRQ ETLLLFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-14198542108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN3791050.0JN379105.1 Brassica rapa subsp. oleifera myb-like transcription factor 2 (MYBL2-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451742.11e-129PREDICTED: transcription repressor MYB6-like
TrEMBLA0A0D3APT31e-116A0A0D3APT3_BRAOL; Uncharacterized protein
TrEMBLI6T5P01e-116I6T5P0_BRANA; Myb-like transcription factor 2
TrEMBLI6UB651e-116I6UB65_BRAOV; Myb-like transcription factor 2
STRINGBo2g070770.11e-117(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71030.17e-89MYB-like 2