PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17361_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 225aa    MW: 25289.6 Da    PI: 8.8384
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17361_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.2e-1962116256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tkeq   Lee F+ +++++ +++++LA++l+L  rqV vWFqNrRa+ k
  RrC17361_p1  62 RKKLRLTKEQSALLEESFKHHSTLNPKQKQDLARQLNLRPRQVEVWFQNRRARTK 116
                  788899***********************************************98 PP
2HD-ZIP_I/II125.32.7e-4062151191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en rL+ke +eL+ +l
  RrC17361_p1  62 RKKLRLTKEQSALLEESFKHHSTLNPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENIRLQKEIQELK-TL 151
                  69*************************************************************************************9.54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.49158118IPR001356Homeobox domain
SMARTSM003892.1E-1660122IPR001356Homeobox domain
SuperFamilySSF466891.15E-1860126IPR009057Homeodomain-like
CDDcd000863.30E-1562119No hitNo description
Gene3DG3DSA:1.10.10.607.4E-1862116IPR009057Homeodomain-like
PfamPF000461.4E-1662116IPR001356Homeobox domain
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
SMARTSM003401.6E-23118161IPR003106Leucine zipper, homeobox-associated
PfamPF021831.8E-9118151IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MTVVAGGDLL CRQTSSHSGV SSFSTGRVVK RERDGGEESR EEEETTEKVM SDYHEDEGVS  60
ARKKLRLTKE QSALLEESFK HHSTLNPKQK QDLARQLNLR PRQVEVWFQN RRARTKLKQT  120
EVDCEFLKKC CETLTDENIR LQKEIQELKT LKLTHQPFYM HMPVSTLTMC PSCERIGGRS  180
GGDTGGEGVG GGSSVATTVR RRELSPSRQS LTSSTLVPVP LQLVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110118RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4412530.0AJ441253.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT9.
GenBankAK2292180.0AK229218.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-50-N10.
GenBankATU093410.0U09341.1 Arabidopsis thaliana clone HAT9 homeobox protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478351.11e-144PREDICTED: homeobox-leucine zipper protein HAT9
SwissprotP466033e-94HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLA0A1J3F7W81e-107A0A1J3F7W8_NOCCA; Homeobox-leucine zipper protein HAT9
TrEMBLA0A1J3HM021e-107A0A1J3HM02_NOCCA; Homeobox-leucine zipper protein HAT9
STRINGBo4g151080.11e-104(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.15e-87HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]