PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17403_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 188aa    MW: 21576.5 Da    PI: 8.1876
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17403_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-1875130156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +rk  ++tkeql  Le+ F+++ +++ +++ +L+k+l L+ +q+ vWFqNrRa++k
  RrC17403_p1  75 KRKNKKLTKEQLASLEQSFQEDIKLDSDRKLKLSKELCLQPSQIAVWFQNRRARWK 130
                  688889*************************************************9 PP
2HD-ZIP_I/II78.88.7e-2676136161
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEk 61 
                  +k ++l+keq+++LE+sF+e+ kL+++rK +l++eL lqp q+avWFqnrRAR+k  +l +
  RrC17403_p1  76 RKNKKLTKEQLASLEQSFQEDIKLDSDRKLKLSKELCLQPSQIAVWFQNRRARWKVMKLRV 136
                  5899***************************************************988754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-1962131IPR009057Homeodomain-like
SuperFamilySSF466891.15E-1862132IPR009057Homeodomain-like
PROSITE profilePS5007116.64972132IPR001356Homeobox domain
PfamPF000461.1E-1575130IPR001356Homeobox domain
CDDcd000862.14E-1675133No hitNo description
SMARTSM003891.3E-1575136IPR001356Homeobox domain
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEWSMTSNVE NMRDAFLPVP CLESNSLRSF FNYDPSAGNS YTPALTQATP VICVPESENV  60
TNEYSCPSNN DGTMKRKNKK LTKEQLASLE QSFQEDIKLD SDRKLKLSKE LCLQPSQIAV  120
WFQNRRARWK VMKLRVIILK HNLMKMQSTL NNNQIEGGSQ SYGTDQYSNP MFVASTCFPP  180
ISQQDYPW
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022567767.16e-83putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR09e-62ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A3N6RH092e-92A0A3N6RH09_BRACR; Uncharacterized protein
STRINGBo9g181710.12e-78(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-52homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]