PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1740_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CAMTA
Protein Properties Length: 1044aa    MW: 116513 Da    PI: 5.5553
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1740_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1172.56e-54391542116
        CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                 ++e ++rwlk+ e++ iL+n+e+++lt++++++p+sgsl+L+nr+++++frkDG++w++kkdg+++ E+he+LKvg+ve+l+cyY+h+e++p+fqrr+y
  RrC1740_p2  39 YQEaQTRWLKPPEVHFILHNHERYQLTHTPPQNPTSGSLFLFNRRVLKFFRKDGHQWRRKKDGRAIAEAHERLKVGNVEALSCYYVHGEHDPSFQRRIY 137
                 56769********************************************************************************************** PP

        CG-1 100 wlLeeelekivlvhyle 116
                 w+L+ e+++ivlvhy++
  RrC1740_p2 138 WMLDPEYDHIVLVHYRD 154
                 ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143775.6835161IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-7638156IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-4641154IPR005559CG-1 DNA-binding domain
CDDcd001022.35E-6485567No hitNo description
PfamPF018333.6E-8485565IPR002909IPT domain
Gene3DG3DSA:2.60.40.101.3E-7485565IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.38E-17485566IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.207.0E-14663757IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.424665757IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.04E-14668759IPR020683Ankyrin repeat-containing domain
CDDcd002045.95E-12685757No hitNo description
PfamPF127969.7E-7691758IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01698727IPR002110Ankyrin repeat
PROSITE profilePS5008810.232698730IPR002110Ankyrin repeat
SMARTSM002483400737766IPR002110Ankyrin repeat
SMARTSM0001514812834IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.382814841IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.45E-6815920IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.97868890IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407869898IPR000048IQ motif, EF-hand binding site
PfamPF006120.0081871889IPR000048IQ motif, EF-hand binding site
SMARTSM000156.3E-4891913IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.267892916IPR000048IQ motif, EF-hand binding site
PfamPF006126.8E-5894913IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1044 aa     Download sequence    Send to blast
MGIAAEDHAR NLTSIFVAIC RKRPLLFPAK LEYEINTLYQ EAQTRWLKPP EVHFILHNHE  60
RYQLTHTPPQ NPTSGSLFLF NRRVLKFFRK DGHQWRRKKD GRAIAEAHER LKVGNVEALS  120
CYYVHGEHDP SFQRRIYWML DPEYDHIVLV HYRDISDGKE GRQTSGTVLQ FSQNASALFS  180
SPSSIGTQYN HYMSDSTDVL QQHSSTSPGV VEVNSEVVFN SNGVETPEGS GSSYELENRQ  240
AIKRLEEQLS LGDDVVSTVD PLYAQNESLD SLQFLAQPGT VYQRPENNKL ERCYGGYVGA  300
QYNVDPLYSQ NESLDSLLSL DCTEDINHLA QPTTGHQRPE NNRLERSYGG YIGADYHPNN  360
LTLVKNDSGG NGGSGDQESE SWKNVLEACE ASIALNSEGS TPSSVKGLLP GMQEYSNWSF  420
TNQADQGTLF LPQELGSFEH PACYPELGAP QNNAEFNRIM DDEGINRMPL QEEMRPRVSH  480
KQEFTIQDVS PEWGYANETT KVIIIGSFLC DPTWSCMFGT VEVPFEIIKE GVIRCEAPPC  540
GPGKVNLFIT SGDGLSCSQI REFEYRDKPD TSCSRCNPHE LLLLVKFVQT LLSDEPGVGK  600
LKKPKADDDD EEWSHIIDTI LEGSATPTST VDWLLQKLLK DKLDAWVSSR SQDDDDHTSC  660
SLSKQEQGII HTVAGLGFDW ALHPILGLGV SVDFRDSNGW SALHWSARYG REKMVAALIA  720
SGASAGAVTD PNAQDPSGKT AASIAASNGH KGLAGYLSEV ALTNHLSSLT LEETEHSLGS  780
AQVEAEMMVN SISGRSPPGN GDDPHSRAAL RNVAQAAARI QAAFRAHSFR KRQEREAVMA  840
ACYQEYGIYA DIEGIAAMSK LAFGNAKNYN SAALSIQKKY RGYKGRKEFL AKRQKVVKIQ  900
AYVRGYQVRK HYKVICWAVG ILDKVVLRWR RKGVGLKGFR QDVESREEES EDEDILKVFR  960
KEKVDGAVNE AFSRVLSMTN SPDARQQYQR VLKRYCQTKA ELGKTETLGT DGGDEDDDAL  1020
LDIADMQYEN LRTEFRGFNS NNSL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892000.0AC189200.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005J17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018471219.10.0PREDICTED: calmodulin-binding transcription activator 4-like
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A078IP550.0A0A078IP55_BRANA; BnaC02g45620D protein
STRINGBo2g055720.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]