PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1743_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 201aa    MW: 22145.8 Da    PI: 9.5208
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1743_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.92e-1641124186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++  v  L+ea++ ++   +r+klk+++We+v++++    ++++  ++++qCk+k+e+++kry+ + +++ +      s++p++++l+
  RrC1743_p1  41 EWSEGAVSSLLEAYETKWVLRNRAKLKGQDWEDVARHVssraSHTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYSRLD 124
                 5*************************************87766777788999*****************99997......46****9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.8E-2139126No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEDGDSNQEH PQPLPTNDDP SSPKKPSTSS IVVVDRLKRD EWSEGAVSSL LEAYETKWVL  60
RNRAKLKGQD WEDVARHVSS RASHTKSPKT QTQCKNKIES MKKRYRSESA TADGSSWPLY  120
SRLDHLLRGN ASTSVQPQPQ LQPQAVLPLN CSAPLLLLEP PSPAVTHPPQ QPPAAQMSHG  180
SNGVGTIKVT NQSFRFGMVF G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491556.11e-134PREDICTED: trihelix transcription factor ASIL1
TrEMBLA0A3P5YI551e-106A0A3P5YI55_BRACM; Uncharacterized protein
STRINGBo8g083630.11e-106(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98592533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.12e-69sequence-specific DNA binding transcription factors