PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1743_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

SRS

Protein Properties

Length: 149aa MW: 16577.8 Da PI: 10.8781

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1743_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	88.5	1.6e-27	67	136	4	77
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkre 77 ++ C dCGn+akk+C +eRCRtCCksrg++CathvkstWvp++ + +++ss+++++ + ++s+++++ RrC1743_p4 67 EEKVCTDCGNRAKKECLFERCRTCCKSRGYNCATHVKSTWVPSSAASRS----SSSSSDRNKKLKLHSSDKPKS 136 6789**************************************9876543....233333334444444555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.5E-23	69	120	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.9E-27	70	111	IPR006510	Zinc finger, lateral root primordium type 1

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MATAASTFTI INSFLRRRRR LHHYMLGLRN TIFLPQPPSQ VTQPSPSPVN FAAVEESNKS 60 SRNSNVEEKV CTDCGNRAKK ECLFERCRTC CKSRGYNCAT HVKSTWVPSS AASRSSSSSS 120 DRNKKLKLHS SDKPKSVLIV PTTTSRQGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	20	LRRRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018486811.1	3e-70	PREDICTED: protein SHI RELATED SEQUENCE 6-like
Swissprot	Q9M2U4	9e-46	SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBL	A0A397YB20	1e-67	A0A397YB20_BRACM; Uncharacterized protein
STRING	Bra007072.1-P	2e-66	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11959	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54430.1	2e-38	SHI-related sequence 6

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]