PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17465_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 123aa    MW: 13149.5 Da    PI: 8.338
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17465_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.8e-1095118125
                  --S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                  +kt+lC+ f++ GtC+y  +C+FaH
  RrC17465_p1  95 FKTKLCCKFRA-GTCPYVTNCNFAH 118
                  79*********.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.3E-1292123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.04E-792123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.67194121IPR000571Zinc finger, CCCH-type
SMARTSM003560.003994120IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-795118IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MSHRRESSGD VVHVIPTNNP PPENWFPNLG DTSVWATEDD YNRGWAVNPD NSSSGGDNGP  60
PNKKTRGSPS SSSSSAAAAA AAASNRTKAI GKMFFKTKLC CKFRAGTCPY VTNCNFAHTV  120
EEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892551e-58AC189255.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436497.19e-73PREDICTED: zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-63C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A078IQ761e-62A0A078IQ76_BRANA; BnaA05g35950D protein
TrEMBLA0A0D3CDQ12e-62A0A0D3CDQ1_BRAOL; Uncharacterized protein
TrEMBLA0A1J3IEK72e-62A0A1J3IEK7_NOCCA; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A397ZAS61e-62A0A397ZAS6_BRACM; Uncharacterized protein
TrEMBLA0A3P6FJ412e-62A0A3P6FJ41_BRAOL; Uncharacterized protein
TrEMBLM4D1061e-62M4D106_BRARP; Uncharacterized protein
STRINGBra010155.1-P2e-63(Brassica rapa)
STRINGBo5g048980.13e-63(Brassica oleracea)
STRINGXP_006415209.16e-63(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-61C3H family protein