PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17478_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 182aa    MW: 21095.7 Da    PI: 7.9987
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17478_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-162466145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +++WT+ Ed++lv+a+k +G++ W++Ia ++  gRt++ +k+rw+
      RrC17478_p1 24 KNAWTEKEDQILVEAHKAFGNK-WTKIALKLH-GRTENAIKNRWN 66
                     689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.976118IPR017930Myb domain
SuperFamilySSF466891.71E-24173IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-9228IPR009057Homeodomain-like
PROSITE profilePS5129422.8761973IPR017930Myb domain
SMARTSM007174.2E-152371IPR001005SANT/Myb domain
PfamPF002498.3E-152466IPR001005SANT/Myb domain
CDDcd001672.52E-112669No hitNo description
Gene3DG3DSA:1.10.10.605.3E-182967IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MLGTRIGKQC RERWHNHLRH GIKKNAWTEK EDQILVEAHK AFGNKWTKIA LKLHGRTENA  60
IKNRWNATKR RMHFMKMKQS DKNANPPQNV ILAGYIRHVT NKNESPNTKE TDCTKNDDYD  120
NAFDGEMDLS LGVTTQNTEP LASMSTTSCY VPEPATTFSW DDYITNVCES KDDFDMIMQG  180
WE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2527137106B-MYB
1gv2_A4e-2527134103MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-2527134103C-Myb DNA-Binding Domain
1msf_C3e-2527134103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes the motif 5'-TAACGG-3' in the promoter of target genes (PubMed:27681170). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner (PubMed:18695688). Together with MYB118, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:27681170}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by LEC2 but repressed by MYB118. {ECO:0000269|PubMed:27681170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479665.11e-135PREDICTED: transcription factor MYB98
SwissprotQ1PDP99e-46MY115_ARATH; Transcription factor MYB115
TrEMBLA0A0D3C0861e-112A0A0D3C086_BRAOL; Uncharacterized protein
STRINGBo4g140150.11e-112(Brassica oleracea)
STRINGBo4g140330.11e-113(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133031427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40360.14e-48myb domain protein 115
Publications ? help Back to Top
  1. Troncoso-Ponce MA, et al.
    Transcriptional Activation of Two Delta-9 Palmitoyl-ACP Desaturase Genes by MYB115 and MYB118 Is Critical for Biosynthesis of Omega-7 Monounsaturated Fatty Acids in the Endosperm of Arabidopsis Seeds.
    Plant Cell, 2016. 28(10): p. 2666-2682
    [PMID:27681170]
  2. Ettaki H, et al.
    Overexpression of MYB115, AAD2, or AAD3 in Arabidopsis thaliana seeds yields contrasting omega-7 contents.
    PLoS ONE, 2018. 13(1): p. e0192156
    [PMID:29381741]