PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1749_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 380aa    MW: 42462.6 Da    PI: 6.0313
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1749_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.19.3e-342882155
     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                kprl+Wtp+LHerFveav+qLGG ekAtPkti+++m+++gLtl+h+kSHLQkYRl
  RrC1749_p4 28 KPRLKWTPDLHERFVEAVNQLGGGEKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 82
                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.7272585IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-312683IPR009057Homeodomain-like
SuperFamilySSF466894.84E-172783IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-232883IPR006447Myb domain, plants
PfamPF002499.8E-113081IPR001005SANT/Myb domain
PfamPF143792.0E-24129175IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MPIPTERHPF LRGNGPGDSG LILSTDAKPR LKWTPDLHER FVEAVNQLGG GEKATPKTIM  60
KVMGIPGLTL YHLKSHLQKY RLSKNLNGQA NSSLNKTSVM TMVEENTPEA DESQSESLSI  120
GPQPSMNLPI SDALKMQIAV QRRLHEQLEV QRHLQLRIEA QGKYLQAILE KAQETLGRQN  180
LGPAGIEATK AQLSELVSKV SSEYPDASFL ELQNLHHQQM QTAYPPPNSS LESCLTSSEG  240
TQKAAPKMLE NRLGLRTYLG DSTSEQKELM EEPFFQRMEL TWAEEEEEGI RENSRPYLST  300
MEPRSSSSRR SPGRLSIGVG LQEHIGGSSN KGYTEERFNE SGEDCKVETR ARTALDLNTH  360
DETYGTARPK QFDLNGFSWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-222884258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-222884258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-222884157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-222884157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-222884157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-222884157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-222884258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-222884258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-222884258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-222884258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-222884258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-222884258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0428780.0AY042878.1 Arabidopsis thaliana transfactor-like protein (MRG7.19) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443809.10.0PREDICTED: myb-related protein 1 isoform X1
RefseqXP_018443810.10.0PREDICTED: myb-related protein 1 isoform X1
SwissprotQ9FK470.0PHLA_ARATH; Myb-related protein 1
TrEMBLA0A397XTD70.0A0A397XTD7_BRACM; Uncharacterized protein
STRINGBra002145.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33362764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18240.40.0myb-related protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]