PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1751_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 195aa MW: 22724.9 Da PI: 5.3605

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1751_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.8	2.4e-13	85	135	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +++rr+++NRe+ArrsR RK+ ++eL v L + N+ L+++l++ ++ RrC1751_p1 85 RKQRRMISNRESARRSRMRKQRHLDELWSQVIRLRTDNHCLIDKLNNVSES 135 79****************************************999998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.5E-11	79	135	No hit	No description
SMART	SM00338	9.8E-14	81	145	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.048	83	135	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.81E-12	85	134	No hit	No description
Pfam	PF00170	1.2E-11	85	135	IPR004827	Basic-leucine zipper domain
CDD	cd14702	3.08E-18	86	136	No hit	No description
PROSITE pattern	PS00036	0	88	103	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MNTIPEEFTG YFKYVSPEKY NNQTPIMESE YFNMHSSPTS SSYYINGLIN NNSYYSSSSN 60 GHDLMMSNNS ASDEDHQQSM AIDERKQRRM ISNRESARRS RMRKQRHLDE LWSQVIRLRT 120 DNHCLIDKLN NVSESHELAL KENAKLKEET SDLRQLITEI KSNKEDDNSF LRELEDSISN 180 AGSGSDQTGR NFELY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	104	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC027134	0.0	AC027134.4 Arabidopsis thaliana chromosome I BAC F13B4 genomic sequence, complete sequence.
GenBank	AF332430	0.0	AF332430.1 Arabidopsis thaliana clone C00105 (e) putative bZIP transcription factor (At1g13600) mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F21F23	0.0	AC027656.4 Sequence of BAC F21F23 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437571.1	1e-140	PREDICTED: basic leucine zipper 43-like
Swissprot	Q9FMC2	2e-33	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	M4EDN5	1e-119	M4EDN5_BRARP; Uncharacterized protein
STRING	Bra026895.1-P	1e-120	(Brassica rapa)
STRING	Bra026896.1-P	1e-120	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2892	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13600.1	1e-103	basic leucine-zipper 58

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]